一种用于标本馆标本的非破坏性DNA采样技术。
A non-destructive DNA sampling technique for herbarium specimens.
作者信息
Shepherd Lara D
机构信息
Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand.
出版信息
PLoS One. 2017 Aug 31;12(8):e0183555. doi: 10.1371/journal.pone.0183555. eCollection 2017.
Abstract
Herbarium specimens are an important source of DNA for plant research but current sampling methods require the removal of material for DNA extraction. This is undesirable for irreplaceable specimens such as rare species or type material. Here I present the first non-destructive sampling method for extracting DNA from herbarium specimens. DNA was successfully retrieved from robust leaves and/or stems of herbarium specimens up to 73 years old.
摘要
植物标本是植物研究中DNA的重要来源，但目前的采样方法需要去除材料以进行DNA提取。对于珍稀物种或模式标本等不可替代的标本来说，这是不可取的。在此，我提出了第一种从植物标本中提取DNA的非破坏性采样方法。已成功从保存长达73年的植物标本的坚韧叶片和/或茎中提取出DNA。
相似文献
1
A non-destructive DNA sampling technique for herbarium specimens.一种用于标本馆标本的非破坏性DNA采样技术。
PLoS One. 2017 Aug 31;12(8):e0183555. doi: 10.1371/journal.pone.0183555. eCollection 2017.
2
Herbarium Specimens: A Treasure for DNA Extraction, an Update.植物标本馆标本：DNA提取的宝库，最新进展
Methods Mol Biol. 2021;2222:69-88. doi: 10.1007/978-1-0716-0997-2_4.
3
Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia.黄檀属新鲜标本与腊叶标本中不同DNA提取方法的比较分析
Genet Mol Res. 2007 Mar 29;6(1):173-87.
4
DNA extraction from herbarium specimens.从植物标本中提取DNA。
Methods Mol Biol. 2014;1115:69-84. doi: 10.1007/978-1-62703-767-9_4.
5
Non-destructive DNA extraction from herbarium specimens: a method particularly suitable for plants with small and fragile leaves.从植物标本中提取非破坏性 DNA：一种特别适用于小而脆弱叶片植物的方法。
J Plant Res. 2020 Jan;133(1):133-141. doi: 10.1007/s10265-019-01152-4. Epub 2019 Nov 23.
6
DNA damage in plant herbarium tissue.植物标本组织中的 DNA 损伤。
PLoS One. 2011;6(12):e28448. doi: 10.1371/journal.pone.0028448. Epub 2011 Dec 5.
7
A Rapid and Cost-Effective Method for DNA Extraction from Archival Herbarium Specimens.一种从馆藏标本中快速提取DNA且经济高效的方法。
Biochemistry (Mosc). 2015 Nov;80(11):1478-84. doi: 10.1134/S0006297915110097.
8
Extraction of ultrashort DNA molecules from herbarium specimens.从植物标本中提取超短DNA分子。
Biotechniques. 2017 Feb 1;62(2):76-79. doi: 10.2144/000114517.
9
A plea for modern botanical collections to include DNA-friendly material.呼吁现代植物学采集应包含适合 DNA 分析的材料。
Trends Plant Sci. 2013 Apr;18(4):184-5. doi: 10.1016/j.tplants.2012.12.006. Epub 2013 Jan 8.
10
DNA barcoding for plants.植物的DNA条形码技术
Methods Mol Biol. 2015;1245:101-18. doi: 10.1007/978-1-4939-1966-6_8.
引用本文的文献
1
The identification of plants used to make tapa artefacts: development of a reference DNA database and trial of non-destructive DNA extraction methods.用于制作塔帕制品的植物鉴定：参考DNA数据库的建立及非破坏性DNA提取方法的试验
J R Soc N Z. 2021 Oct 4;52(5):491-507. doi: 10.1080/03036758.2021.1981402. eCollection 2022.
2
Developing the Protocol Infrastructure for DNA Sequencing Natural History Collections.开发用于DNA测序自然历史标本馆的协议基础设施。
Biodivers Data J. 2023 Oct 27;11:e102317. doi: 10.3897/BDJ.11.e102317. eCollection 2023.
3
From Dormant Collections to Repositories for the Study of Habitat Changes: The Importance of Herbaria in Modern Life Sciences.从休眠收藏到栖息地变化研究的资源库：植物标本馆在现代生命科学中的重要性。
Life (Basel). 2023 Dec 8;13(12):2310. doi: 10.3390/life13122310.
4
Improving the gold standard in NCBI GenBank and related databases: DNA sequences from type specimens and type strains.提高 NCBI GenBank 和相关数据库的黄金标准：来自模式标本和模式菌株的 DNA 序列。
Syst Biol. 2024 Jul 27;73(2):486-494. doi: 10.1093/sysbio/syad068.
5
Challenges and Opportunities behind the Use of in Paleogenomics Studies.古基因组学研究中[具体内容未给出]使用背后的挑战与机遇。
Plants (Basel). 2023 Sep 30;12(19):3452. doi: 10.3390/plants12193452.
6
Ancient DNA extraction methods for herbarium specimens: When is it worth the effort?植物标本馆标本的古DNA提取方法：何时值得一试？
Appl Plant Sci. 2022 Jun 15;10(3):e11477. doi: 10.1002/aps3.11477. eCollection 2022 May-Jun.
7
The effect of eraser sampling for proteomic analysis on Palaeolithic bone surface microtopography.擦取采样对旧石器时代骨表面微观形貌的蛋白质组学分析的影响。
Sci Rep. 2021 Dec 8;11(1):23611. doi: 10.1038/s41598-021-02823-w.
8
Bird nests as botanical time capsules: DNA barcoding identifies the contents of contemporary and historical nests.鸟巢作为植物学的时间胶囊：DNA 条码鉴定当代和历史鸟巢的内容物。
PLoS One. 2021 Oct 6;16(10):e0257624. doi: 10.1371/journal.pone.0257624. eCollection 2021.
9
Environmental genomics of Late Pleistocene black bears and giant short-faced bears.更新世晚期黑熊和短面熊的环境基因组学。
Curr Biol. 2021 Jun 21;31(12):2728-2736.e8. doi: 10.1016/j.cub.2021.04.027. Epub 2021 Apr 19.
10
New protocol for successful isolation and amplification of DNA from exiguous fractions of specimens: a tool to overcome the basic obstacle in molecular analyses of myxomycetes.从标本微量部分成功分离和扩增DNA的新方案：克服黏菌分子分析基本障碍的工具
PeerJ. 2020 Jan 24;8:e8406. doi: 10.7717/peerj.8406. eCollection 2020.
本文引用的文献
1
Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens.从植物标本馆标本中提取的 DNA 的损伤和衰变动力学的时间模式。
R Soc Open Sci. 2016 Jun 22;3(6):160239. doi: 10.1098/rsos.160239. eCollection 2016 Jun.
2
The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae).解析近期辐射演化的探索：已灭绝和濒危的夏威夷特有薄荷（唇形科）的质体系统发育基因组学
Mol Phylogenet Evol. 2016 Jun;99:16-33. doi: 10.1016/j.ympev.2016.02.024. Epub 2016 Mar 5.
3
Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting.利用非侵入性肽指纹图谱揭示13世纪子宫羊皮纸的动物来源。
Proc Natl Acad Sci U S A. 2015 Dec 8;112(49):15066-71. doi: 10.1073/pnas.1512264112. Epub 2015 Nov 23.
4
All that is gold does not glitter? Age, taxonomy, and ancient plant DNA quality.并非所有金子都会发光？年代、分类学与古代植物DNA质量。
PeerJ. 2015 Jul 23;3:e1087. doi: 10.7717/peerj.1087. eCollection 2015.
5
Targeted capture in evolutionary and ecological genomics.进化与生态基因组学中的靶向捕获
Mol Ecol. 2016 Jan;25(1):185-202. doi: 10.1111/mec.13304. Epub 2015 Jul 30.
6
Watermelon origin solved with molecular phylogenetics including Linnaean material: another example of museomics.利用包括林奈时期材料在内的分子系统发育学解决西瓜起源问题：博物馆组学的又一实例
New Phytol. 2015 Jan;205(2):526-32. doi: 10.1111/nph.13163. Epub 2014 Oct 31.
7
Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens.基因组宝库：植物标本馆和昆虫博物馆标本的全基因组测序。
PLoS One. 2013 Jul 29;8(7):e69189. doi: 10.1371/journal.pone.0069189. Print 2013.
8
How to open the treasure chest? Optimising DNA extraction from herbarium specimens.如何打开宝箱？优化植物标本 DNA 提取。
PLoS One. 2012;7(8):e43808. doi: 10.1371/journal.pone.0043808. Epub 2012 Aug 28.
9
Primer3--new capabilities and interfaces.Primer3--新功能和界面。
Nucleic Acids Res. 2012 Aug;40(15):e115. doi: 10.1093/nar/gks596. Epub 2012 Jun 22.
10
Molecular biology: Protect the DNA of museum specimens.分子生物学：保护博物馆标本的DNA。
Nature. 2012 Apr 25;484(7395):455. doi: 10.1038/484455b.
Zotero 插件