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HLA-DQα基因区域的分子基因分型

Molecular genotyping of the HLA-DQ alpha gene region.

作者信息

Guardiola J, Maffei A, Carrel S, Accolla R S

机构信息

International Institute of Genetics and Biophysics, CNR, Napoli, Italy.

出版信息

Immunogenetics. 1988;27(1):12-8. doi: 10.1007/BF00404438.

DOI:10.1007/BF00404438
PMID:2890575
Abstract

Restriction fragment analysis has been applied to genomic DNA extracted from human tumor cell lines. Polymorphic restriction fragments encompassing the HLA-DQ alpha gene were observed upon digestion with Bgl II, Eco RI, and Hind III. Analysis of these polymorphic fragments (or allogenotopes) showed that for each restriction enzyme a series of three differently sized allogenotopes existed. Clusters of cosegregating allogenotopes belonging to the different allelic series defined three different allogenotypes. Each allogenotype exhibited a distinctive restriction map generated by digestion with five restriction enzymes. Comparison of these restriction maps showed that generation of the polymorphisms observed at the HLA-DQ alpha region in these sets of cell lines is not caused by a single event. In some B- and T-lymphoma cell lines a fourth allogenotype was found. The restriction site map of genomic DNA from these cell lines suggested that the latter distribution of restriction enzyme sites was most probably generated by recombination between two of the previously observed allogenotypes at a crossover site(s) adjacent to the HLA-DQ alpha gene.

摘要

限制性片段分析已应用于从人类肿瘤细胞系中提取的基因组DNA。在用Bgl II、Eco RI和Hind III消化后,观察到包含HLA-DQα基因的多态性限制性片段。对这些多态性片段(或同种异型表位)的分析表明,对于每种限制酶,存在一系列三种不同大小的同种异型表位。属于不同等位基因系列的共分离同种异型表位簇定义了三种不同的同种异型基因型。每种同种异型基因型都表现出由五种限制酶消化产生的独特限制性图谱。这些限制性图谱的比较表明,在这些细胞系组中HLA-DQα区域观察到的多态性的产生不是由单一事件引起的。在一些B细胞和T细胞淋巴瘤细胞系中发现了第四种同种异型基因型。来自这些细胞系的基因组DNA的限制性酶切位点图谱表明,后者限制性酶切位点的分布很可能是由先前观察到的两种同种异型基因型在与HLA-DQα基因相邻的一个或多个交叉位点处重组产生的。

相似文献

1
Molecular genotyping of the HLA-DQ alpha gene region.HLA-DQα基因区域的分子基因分型
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2
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引用本文的文献

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DNA polymorphisms in the 5'-flanking region of the HLA-DQA1 gene.HLA - DQA1基因5'侧翼区域的DNA多态性
Immunogenetics. 1992;35(3):176-82. doi: 10.1007/BF00185111.

本文引用的文献

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Polymorphism and complexity of the human DC and murine I-A alpha chain genes.人类DC和小鼠I-Aα链基因的多态性与复杂性
EMBO J. 1983;2(1):121-4. doi: 10.1002/j.1460-2075.1983.tb01392.x.
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The highly polymorphic region near the human insulin gene is composed of simple tandemly repeating sequences.人类胰岛素基因附近的高度多态性区域由简单串联重复序列组成。
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Isolation of distinct cDNA clones encoding HLA-DR beta chains by use of an expression assay.通过表达分析分离编码HLA - DRβ链的不同cDNA克隆。
Proc Natl Acad Sci U S A. 1982 Dec;79(23):7465-9. doi: 10.1073/pnas.79.23.7465.
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Isolation of cDNA clones encoding HLA-DR alpha chains.编码HLA - DRα链的cDNA克隆的分离
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Involvement of chromosome 6 in rearrangements in human malignant melanoma cell lines.6号染色体参与人类恶性黑色素瘤细胞系的重排。
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Recombination within the HLA-D region. Correlation of molecular genotyping with functional data.HLA-D区域内的重组。分子基因分型与功能数据的相关性。
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Six HLA-D region alpha-chain genes on human chromosome 6: polymorphisms and associations of DC alpha-related sequences with DR types.人类6号染色体上的六个HLA - D区域α链基因:DCα相关序列的多态性及其与DR型的关联。
Proc Natl Acad Sci U S A. 1984 Jun;81(11):3461-5. doi: 10.1073/pnas.81.11.3461.