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[粘细菌漆酶样多铜氧化酶的生物信息学分析与表征]

[Bioinformatic analysis and characterization of myxobacteria laccase-like multicopper oxidases].

作者信息

Zhao Xiuyan, Chang Fei, Fang Zemin, Zhang Yinliang, Xiao Yazhong

机构信息

School of Life Sciences, Anhui University, Hefei 230601, Anhui, China.

Anhui Provincial Engineering Technology Research Center of Microorganisms and Biocatalysis, Hefei 230601, Anhui, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2017 Apr 25;33(4):609-619. doi: 10.13345/j.cjb.160355.

Abstract

Laccase is a widely-used environment-friendly copper-containing oxidase found in many plants, insects and fungi. Recently, more and more laccases are also found in bacteria. Myxobacteria are an important bacteria resource. However, myxobacteria are much more difficult to isolate and purify than other bacteria. We used bioinformatic approach to screen myxobacteria proteomes available in NCBI. Based on conserved sequences of four copper binding sites in multicopper oxidase, 30 potential laccase sequences were obtained. Among them, nine genes were synthesized and expressed in Escherichia coli BL21 (DE3). Seven proteins showed laccase activity when tested with traditional laccase substrates. One protein, named rSC-2, was chosen for further research because it exhibited the highest activity towards 2,6-dimethyl phenol (DMP). The molecular weight of rSC-2 was 57 kDa. Its specific activity to DMP was 0.27 U/mg. The optimal temperature and the optimal pH were 60 ℃ and 7.0, respectively. About 50% of the original activity was retained after incubation at 60 ℃ and pH 7.0-8.0 for 1 h. Metals showed different effects on rSC-2. rSC-2 activity was enhanced by several metalsat concentration of 1 mmol/L, such as Ca²⁺ and Mn²⁺. With a higher concentration of 5 mmol/L, the activity of rSC-2 was apparently inhibited. This is the first report of bioinformatics screening myxobacteria laccases in combination with expression in E. coli.

摘要

漆酶是一种广泛应用的含铜氧化酶,存在于许多植物、昆虫和真菌中。最近,在细菌中也发现了越来越多的漆酶。粘细菌是一种重要的细菌资源。然而,粘细菌比其他细菌更难分离和纯化。我们采用生物信息学方法筛选了NCBI中可获得的粘细菌蛋白质组。基于多铜氧化酶中四个铜结合位点的保守序列,获得了30个潜在的漆酶序列。其中,9个基因在大肠杆菌BL21(DE3)中合成并表达。用传统漆酶底物检测时,7种蛋白质表现出漆酶活性。选择一种名为rSC-2的蛋白质进行进一步研究,因为它对2,6-二甲基苯酚(DMP)表现出最高活性。rSC-2的分子量为57 kDa。其对DMP的比活性为0.27 U/mg。最适温度和最适pH分别为60℃和7.0。在60℃、pH 7.0-8.0孵育1小时后,仍保留约50%的原始活性。金属对rSC-2有不同影响。1 mmol/L浓度的几种金属如Ca²⁺和Mn²⁺可增强rSC-2活性。浓度为5 mmol/L时,rSC-2的活性明显受到抑制。这是首次报道结合大肠杆菌表达对粘细菌漆酶进行生物信息学筛选。

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