• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

TCR特异性的新观念:合理化及(或许)预测结果

Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes.

作者信息

Singh Nishant K, Riley Timothy P, Baker Sarah Catherine B, Borrman Tyler, Weng Zhiping, Baker Brian M

机构信息

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556; and.

出版信息

J Immunol. 2017 Oct 1;199(7):2203-2213. doi: 10.4049/jimmunol.1700744.

DOI:10.4049/jimmunol.1700744
PMID:28923982
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5679125/
Abstract

T cell specificity emerges from a myriad of processes, ranging from the biological pathways that control T cell signaling to the structural and physical mechanisms that influence how TCRs bind peptides and MHC proteins. Of these processes, the binding specificity of the TCR is a key component. However, TCR specificity is enigmatic: TCRs are at once specific but also cross-reactive. Although long appreciated, this duality continues to puzzle immunologists and has implications for the development of TCR-based therapeutics. In this review, we discuss TCR specificity, emphasizing results that have emerged from structural and physical studies of TCR binding. We show how the TCR specificity/cross-reactivity duality can be rationalized from structural and biophysical principles. There is excellent agreement between predictions from these principles and classic predictions about the scope of TCR cross-reactivity. We demonstrate how these same principles can also explain amino acid preferences in immunogenic epitopes and highlight opportunities for structural considerations in predictive immunology.

摘要

T细胞特异性源自众多过程,从控制T细胞信号传导的生物学途径到影响TCR如何结合肽和MHC蛋白的结构和物理机制。在这些过程中,TCR的结合特异性是关键组成部分。然而,TCR特异性却很神秘:TCR既具有特异性又具有交叉反应性。尽管这一点早已为人所知,但这种双重性仍然困扰着免疫学家,并对基于TCR的治疗方法的开发产生影响。在这篇综述中,我们讨论TCR特异性,重点介绍TCR结合的结构和物理研究中出现的结果。我们展示了如何从结构和生物物理原理来解释TCR特异性/交叉反应性的双重性。这些原理的预测与关于TCR交叉反应范围的经典预测之间存在极好的一致性。我们证明了这些相同的原理也可以解释免疫原性表位中的氨基酸偏好,并强调了预测性免疫学中结构考虑的机会。

相似文献

1
Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes.TCR特异性的新观念:合理化及(或许)预测结果
J Immunol. 2017 Oct 1;199(7):2203-2213. doi: 10.4049/jimmunol.1700744.
2
Structural and dynamic control of T-cell receptor specificity, cross-reactivity, and binding mechanism.T 细胞受体特异性、交叉反应性和结合机制的结构和动力学控制。
Immunol Rev. 2012 Nov;250(1):10-31. doi: 10.1111/j.1600-065X.2012.01165.x.
3
Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring.使用分子建模和力场评分鉴定 T 细胞受体的同源肽-MHC 靶标。
Mol Immunol. 2018 Feb;94:91-97. doi: 10.1016/j.molimm.2017.12.019. Epub 2017 Dec 27.
4
Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors.预测 T 细胞受体的交叉反应性和抗原特异性。
Front Immunol. 2020 Oct 22;11:565096. doi: 10.3389/fimmu.2020.565096. eCollection 2020.
5
Deciphering CD4 T cell specificity using novel MHC-TCR chimeric receptors.利用新型 MHC-TCR 嵌合受体破译 CD4 T 细胞特异性。
Nat Immunol. 2019 May;20(5):652-662. doi: 10.1038/s41590-019-0335-z. Epub 2019 Mar 11.
6
Two-step binding mechanism for T-cell receptor recognition of peptide MHC.T细胞受体识别肽-MHC的两步结合机制。
Nature. 2002 Aug 1;418(6897):552-6. doi: 10.1038/nature00920.
7
Structural bases for the affinity-driven selection of a public TCR against a dominant human cytomegalovirus epitope.针对主要人类巨细胞病毒表位的公共T细胞受体亲和力驱动选择的结构基础
J Immunol. 2009 Jul 1;183(1):430-7. doi: 10.4049/jimmunol.0900556.
8
Structural basis for self-recognition by autoimmune T-cell receptors.自身免疫性 T 细胞受体自我识别的结构基础。
Immunol Rev. 2012 Nov;250(1):32-48. doi: 10.1111/imr.12002.
9
Highly cross-reactive T cell responses to myelin basic protein epitopes reveal a nonpredictable form of TCR degeneracy.对髓鞘碱性蛋白表位具有高度交叉反应性的T细胞应答揭示了一种无法预测的TCR简并形式。
J Immunol. 1999 Jun 1;162(11):6451-7.
10
Direct molecular mimicry enables off-target cardiovascular toxicity by an enhanced affinity TCR designed for cancer immunotherapy.直接分子模拟通过为癌症免疫疗法设计的增强亲和力TCR导致脱靶心血管毒性。
Sci Rep. 2016 Jan 13;6:18851. doi: 10.1038/srep18851.

引用本文的文献

1
SCAN-ACT: adoptive T cell therapy target discovery through single-cell transcriptomics.SCAN-ACT:通过单细胞转录组学发现过继性T细胞疗法的靶点
Genome Med. 2025 Aug 14;17(1):89. doi: 10.1186/s13073-025-01514-9.
2
Peptide-specific natural killer cell receptors.肽特异性自然杀伤细胞受体
Oxf Open Immunol. 2025 Apr 17;6(1):iqaf003. doi: 10.1093/oxfimm/iqaf003. eCollection 2025.
3
T-cell receptor dynamics in digestive system cancers: a multi-layer machine learning approach for tumor diagnosis and staging.消化系统癌症中的T细胞受体动力学:一种用于肿瘤诊断和分期的多层机器学习方法

本文引用的文献

1
Identifying specificity groups in the T cell receptor repertoire.识别T细胞受体库中的特异性组。
Nature. 2017 Jul 6;547(7661):94-98. doi: 10.1038/nature22976. Epub 2017 Jun 21.
2
How an alloreactive T-cell receptor achieves peptide and MHC specificity.同种反应性 T 细胞受体如何实现肽和 MHC 的特异性。
Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):E4792-E4801. doi: 10.1073/pnas.1700459114. Epub 2017 Jun 1.
3
Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8 TCR Repertoires to Immunodominant Viral Antigens.
Front Immunol. 2025 Apr 8;16:1556165. doi: 10.3389/fimmu.2025.1556165. eCollection 2025.
4
Dynamic allostery in the peptide/MHC complex enables TCR neoantigen selectivity.肽/MHC复合物中的动态别构作用赋予TCR对新抗原的选择性。
Nat Commun. 2025 Jan 20;16(1):849. doi: 10.1038/s41467-025-56004-8.
5
The Evolving T Cell Receptor Recognition Code: The Rules Are More Like Guidelines.不断演变的T细胞受体识别密码:规则更像是指导方针。
Immunol Rev. 2025 Jan;329(1):e13439. doi: 10.1111/imr.13439.
6
Broadening alloselectivity of T cell receptors by structure guided engineering.通过结构导向工程拓宽 T 细胞受体的 allo 选择性。
Sci Rep. 2024 Nov 6;14(1):26851. doi: 10.1038/s41598-024-75140-7.
7
TCR repertoire dynamics and their responses underscores dengue severity.T细胞受体库动态变化及其反应突出了登革热的严重程度。
iScience. 2024 Sep 16;27(10):110983. doi: 10.1016/j.isci.2024.110983. eCollection 2024 Oct 18.
8
Exploring the potential of structure-based deep learning approaches for T cell receptor design.探索基于结构的深度学习方法在 T 细胞受体设计中的潜力。
PLoS Comput Biol. 2024 Sep 30;20(9):e1012489. doi: 10.1371/journal.pcbi.1012489. eCollection 2024 Sep.
9
TSpred: a robust prediction framework for TCR-epitope interactions using paired chain TCR sequence data.TSpred:一种基于 TCR 序列配对数据的 TCR-表位相互作用的稳健预测框架。
Bioinformatics. 2024 Aug 2;40(8). doi: 10.1093/bioinformatics/btae472.
10
Germline-like TCR-α chains shared between autoreactive T cells in blood and pancreas.血液和胰腺中自身反应性T细胞之间共享的种系样TCR-α链。
Nat Commun. 2024 Jun 13;15(1):4971. doi: 10.1038/s41467-024-48833-w.
序列和结构分析揭示了针对免疫显性病毒抗原的独特且高度多样化的人类CD8 TCR库。
Cell Rep. 2017 Apr 18;19(3):569-583. doi: 10.1016/j.celrep.2017.03.072.
4
Predicting Binding Free Energies: Frontiers and Benchmarks.预测结合自由能:前沿和基准。
Annu Rev Biophys. 2017 May 22;46:531-558. doi: 10.1146/annurev-biophys-070816-033654. Epub 2017 Apr 7.
5
The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design.免疫表位数据库与分析资源在表位发现及合成疫苗设计中的应用
Front Immunol. 2017 Mar 14;8:278. doi: 10.3389/fimmu.2017.00278. eCollection 2017.
6
Broad TCR repertoire and diverse structural solutions for recognition of an immunodominant CD8 T cell epitope.广泛的TCR库以及识别免疫显性CD8 T细胞表位的多种结构解决方案。
Nat Struct Mol Biol. 2017 Apr;24(4):395-406. doi: 10.1038/nsmb.3383. Epub 2017 Feb 27.
7
ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes.ATLAS:一个将野生型和突变型TCR-pMHC复合物的结合亲和力与结构相联系的数据库。
Proteins. 2017 May;85(5):908-916. doi: 10.1002/prot.25260. Epub 2017 Feb 16.
8
Regulation of T cell signalling by membrane lipids.细胞膜脂质对 T 细胞信号转导的调节。
Nat Rev Immunol. 2016 Nov;16(11):690-701. doi: 10.1038/nri.2016.103. Epub 2016 Oct 10.
9
Reversed T Cell Receptor Docking on a Major Histocompatibility Class I Complex Limits Involvement in the Immune Response.反向 T 细胞受体在主要组织相容性复合体 I 复合物上的对接限制了其在免疫反应中的参与。
Immunity. 2016 Oct 18;45(4):749-760. doi: 10.1016/j.immuni.2016.09.007. Epub 2016 Oct 4.
10
Deep Mutational Scans as a Guide to Engineering High Affinity T Cell Receptor Interactions with Peptide-bound Major Histocompatibility Complex.深度突变扫描作为指导工程化高亲和力T细胞受体与肽结合的主要组织相容性复合体相互作用的方法。
J Biol Chem. 2016 Nov 18;291(47):24566-24578. doi: 10.1074/jbc.M116.748681. Epub 2016 Sep 28.