Department of Biological Sciences, Orta Doğu Teknik Üniversitesi (ODTU/METU), Ankara, Turkey.
Department of Molecular Biology and Genetics, Bilkent Üniversitesi, Ankara, Turkey.
Cell Oncol (Dordr). 2017 Dec;40(6):563-578. doi: 10.1007/s13402-017-0351-7. Epub 2017 Sep 19.
Aldo-keto reductases (including AKR1B1 and AKR1B10) constitute a family of oxidoreductases that have been implicated in the pathophysiology of diabetes and cancer, including colorectal cancer (CRC). Available data indicate that, despite their similarities in structure and enzymatic functions, their roles in CRC may be divergent. Here, we aimed to determine the expression and functional implications of AKR1B1 and AKR1B10 in CRC.
AKR1B1 and AKR1B10 gene expression levels were analyzed using publicly available microarray data and ex vivo CRC-derived cDNA samples. Gene Set Enrichment Analysis (GSEA), The Cancer Genome Atlas (TCGA) RNA-seq data and The Cancer Proteome Atlas (TCPA) proteome data were analyzed to determine the effect of high and low AKR1B1 and AKR1B10 expression levels in CRC patients. Proliferation, cell cycle progression, cellular motility, adhesion and inflammation were determined in CRC-derived cell lines in which these genes were either exogenously overexpressed or silenced.
We found that the expression of AKR1B1 was unaltered, whereas that of AKR1B10 was decreased in primary CRCs. GSEA revealed that, while high AKR1B1 expression was associated with increased cell cycle progression, cellular motility and inflammation, high AKR1B10 expression was associated with a weak inflammatory phenotype. Functional studies carried out in CRC-derived cell lines confirmed these data. Microarray data analysis indicated that high expression levels of AKR1B1 and AKR1B10 were significantly associated with shorter and longer disease-free survival rates, respectively. A combined gene expression signature of AKR1B10 (low) and AKR1B1 (high) showed a better prognostic stratification of CRC patients independent of confounding factors.
Despite their similarities, the expression levels and functions of AKR1B1 and AKR1B10 are highly divergent in CRC, and they may have prognostic implications.
醛酮还原酶(包括 AKR1B1 和 AKR1B10)构成了一个氧化还原酶家族,它们与糖尿病和癌症的病理生理学有关,包括结直肠癌(CRC)。现有数据表明,尽管它们在结构和酶功能上相似,但它们在 CRC 中的作用可能不同。在这里,我们旨在确定 AKR1B1 和 AKR1B10 在 CRC 中的表达和功能意义。
使用公共微阵列数据和体外 CRC 衍生的 cDNA 样本分析 AKR1B1 和 AKR1B10 的基因表达水平。基因集富集分析(GSEA)、癌症基因组图谱(TCGA)RNA-seq 数据和癌症蛋白质组图谱(TCPA)蛋白质组数据进行分析,以确定 CRC 患者中 AKR1B1 和 AKR1B10 高表达和低表达水平的影响。在这些基因被外源过表达或沉默的 CRC 衍生细胞系中,确定了增殖、细胞周期进展、细胞迁移、粘附和炎症。
我们发现 AKR1B1 的表达没有改变,而 AKR1B10 的表达在原发性 CRC 中降低。GSEA 表明,虽然 AKR1B1 高表达与细胞周期进展、细胞迁移和炎症增加有关,但 AKR1B10 高表达与较弱的炎症表型有关。在 CRC 衍生细胞系中进行的功能研究证实了这些数据。微阵列数据分析表明,AKR1B1 和 AKR1B10 的高表达水平分别与较短和较长的无病生存率显著相关。AKR1B10(低)和 AKR1B1(高)的联合基因表达特征显示,CRC 患者的预后分层更好,独立于混杂因素。
尽管它们相似,但 AKR1B1 和 AKR1B10 在 CRC 中的表达水平和功能高度不同,它们可能具有预后意义。