Kovalenko Tatiana A, Panteleev Mikhail A, Sveshnikova Anastasia N
Faculty of Physics, Lomonosov Moscow State University, 1/2 Leninskie gory, Moscow 119991, Russia; Center for Theoretical Problems of Physicochemical Pharmacology, Russian Academy of Sciences, 4 Kosygina St, Moscow 119991, Russia.
Faculty of Physics, Lomonosov Moscow State University, 1/2 Leninskie gory, Moscow 119991, Russia; Center for Theoretical Problems of Physicochemical Pharmacology, Russian Academy of Sciences, 4 Kosygina St, Moscow 119991, Russia; National Scientific and Practical Centre of Pediatric Hematology, Oncology and Immunology named after Dmitry Rogachev, 1 Samory Mashela St, Moscow 117198, Russia; Faculty of Biological and Medical Physics, Moscow Institute of Physics and Technology, 9 Institutskii per., Dolgoprudnyi 141700, Russia.
J Theor Biol. 2017 Dec 21;435:125-133. doi: 10.1016/j.jtbi.2017.09.015. Epub 2017 Sep 19.
Membrane-bound enzyme complex of extrinsic tenase (VIIa/TF) is believed to be the primary activator of blood clotting in vivo. This complex (where factor VIIa (FVIIa) is a catalytically active part and tissue factor (TF) is its essential cofactor) activates its primary substrate factor X (FX) leading to factor Xa (FXa) ('a' stands for 'activated'). Both FX and FXa are able to bind to phospholipid membrane and, therefore, are distributed between solution and membrane surface. As a result, two possible mechanisms of substrate delivery to the extrinsic tenase exist: via lateral diffusion on the membrane surface or directly from the solution. Determination of the predominant pathway of substrate delivery is an important key to understanding the precise reaction mechanism. Here we construct a mechanism-driven computational model of FX activation by extrinsic tenase on the surface of phospholipid vesicles of different size. We show that experimentally observed dependence of the tenase activity on the phospholipid concentration could be obtained only if the substrate (FX) is membrane-bound. For correct experimental data description it is also necessary to take into account the dependence of FX/FXa membrane binding parameters (equilibrium dissociation constant and the number of phospholipid molecules per bound FX/FXa) on the membrane curvature. The model predicts that small vesicles promote activation of FX by the extrinsic tenase significantly better than large vesicles (with the same overall phospholipid, factors VIIa, X and TF concentrations in the solution).
外源性凝血酶原酶(VIIa/TF)的膜结合酶复合物被认为是体内血液凝固的主要激活剂。该复合物(其中因子VIIa(FVIIa)是催化活性部分,组织因子(TF)是其必需的辅因子)激活其主要底物因子X(FX),生成因子Xa(FXa)(“a”代表“活化的”)。FX和FXa都能够结合到磷脂膜上,因此分布在溶液和膜表面之间。结果,存在两种将底物递送至外源性凝血酶原酶的可能机制:通过在膜表面的侧向扩散或直接从溶液中递送。确定底物递送的主要途径是理解精确反应机制的重要关键。在这里,我们构建了一个机制驱动的计算模型,用于描述外源性凝血酶原酶在不同大小的磷脂囊泡表面激活FX的过程。我们表明,只有当底物(FX)与膜结合时,才能获得实验观察到的凝血酶原酶活性对磷脂浓度的依赖性。为了正确描述实验数据,还需要考虑FX/FXa膜结合参数(平衡解离常数和每个结合的FX/FXa的磷脂分子数)对膜曲率的依赖性。该模型预测,小囊泡比大囊泡(溶液中总磷脂、因子VIIa、X和TF浓度相同)能显著更好地促进外源性凝血酶原酶对FX的激活。