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不同的外源性凝血因子 X 激活模拟建模方法:局限性和适用领域。

Different modeling approaches in the simulation of extrinsic coagulation factor X activation: Limitations and areas of applicability.

机构信息

Center for Theoretical Problems of Physico-Chemical Pharmacology, Russian Academy of Sciences, Moscow, Russia.

National Medical Research Centre of Pediatric Hematology, Oncology and Immunology named after Dmitry Rogachev, Moscow, Russia.

出版信息

Int J Numer Method Biomed Eng. 2023 Nov;39(11):e3689. doi: 10.1002/cnm.3689. Epub 2023 Feb 17.

DOI:10.1002/cnm.3689
PMID:36802118
Abstract

Proteolytic reactions on the phospholipid membrane surface, so-called "membrane-dependent" reactions, play central role in the process of blood clotting. One particularly important example is FX activation by the extrinsic tenase (VIIa/TF). Here we constructed three mathematical models of FX activation by VIIa/TF: (A) a homogeneous "well-mixed" model, (B) a two-compartment "well-mixed" model, (C) a heterogeneous model with diffusion, to investigate the impact and importance of inclusion of each complexity level. All models provided good description of the reported experimental data and were equivalently applicable for <40 μM of phospholipids. Model C provided better predictions than A, B in the presence of TF-negative phospholipid microparticles. Models predicted that for high TF surface density (S ) and FX deficiency the FX activation rate was limited by the rate of FX binding to the membrane. For low S and excess of FX the reaction rate was limited by the tenase formation rate. The analysis of the substrate delivery pathways revealed that FX bound to VIIa/TF predominantly from solution for S  >2.8 × 10  nmol/cm and from the membrane for lower S . We proposed the experimental setting to distinguish between the collision-limited and non-collision-limited binding. The analysis of models in flow and non-flow conditions revealed that the model of a vesicle in flow might be substituted by model C in the absence of the substrate depletion. Together, this study was the first which provided the direct comparison of more simple and more complex models. The reaction mechanisms were studied in a wide range of conditions.

摘要

磷脂膜表面的蛋白水解反应,即所谓的“膜依赖”反应,在凝血过程中起着核心作用。一个特别重要的例子是 VIIa/TF 对 FX 的激活。在这里,我们构建了三个 VIIa/TF 激活 FX 的数学模型:(A)均相“完全混合”模型,(B)两室“完全混合”模型,(C)具有扩散的非均相模型,以研究纳入每个复杂程度水平的影响和重要性。所有模型都很好地描述了报告的实验数据,并且在 <40 μM 的磷脂存在下同样适用。与 A、B 相比,在 TF 阴性磷脂微粒存在下,C 模型提供了更好的预测。模型预测,对于高 TF 表面密度(S)和 FX 缺乏,FX 激活速率受到 FX 与膜结合速率的限制。对于低 S 和过量的 FX,反应速率受到 tenase 形成速率的限制。底物传递途径的分析表明,对于 S >2.8 × 10 nmol/cm,FX 主要从溶液中与 VIIa/TF 结合,对于较低的 S,则从膜中结合。我们提出了实验设置来区分碰撞限制和非碰撞限制的结合。在流动和非流动条件下对模型的分析表明,在不存在底物消耗的情况下,流动囊泡的模型可以被 C 模型替代。总的来说,这项研究首次对更简单和更复杂的模型进行了直接比较。研究了在广泛条件下的反应机制。

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引用本文的文献

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Modeling the distribution of enzymes on lipid vesicles: A novel framework for surface-mediated reactions in coagulation.在脂质体上模拟酶的分布:凝血中表面介导反应的新框架。
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