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利用基因组和EST微卫星评估不同地理区域马铃薯品种间的遗传多样性

Assessment of the Genetic Diversity Among Potato Cultivars from Different Geographical Areas Using the Genomic and EST Microsatellites.

作者信息

Salimi Haleh, Bahar Masoud, Mirlohi Aghafakhr, Talebi Majid

机构信息

Department of Biotechnology, College of Agriculture, Isfahan University of Technology, Isfahan, Iran.

出版信息

Iran J Biotechnol. 2016 Dec;14(4):270-277. doi: 10.15171/ijb.1280.

Abstract

BACKGROUND

Potato has a narrow genetic base which is due to its development, as it takes its genetic root from a few genotypes originated from South America.

OBJECTIVES

The objective of this study was to assess the genetic relationships among potato ( L.) genotypes originated from different geographical regions.

MATERIALS AND METHODS

This study has rendered 25 useful SSRs and EST-SSRs that were located in pre-existing genetic maps, fingerprinted in a collection of the 47 potato genotypes from America, Europe and Iran.

RESULTS

The number of alleles per locus ranged from 2 to 9 with an average of 6.22 alleles per locus. UPGMA dendrogram, constructed from microsatellite data based on Jaccard similarity coefficient slightly clustered the American and European potatoes according to their geographical distribution. Iranian genotype, "Istanbuli", joined to a group with American genotype. The results indicated that American genotypes show the highest expected heterozygosity compared to the European genotype. This result was expected due to the narrow genetic base of European potatoes considering their origin from a limited number of introductions.

CONCLUSIONS

It could be concluded that SSR is an appropriate marker for evaluating genetic diversity within and among potatoes from different geographical regions.

摘要

背景

马铃薯的遗传基础狭窄,这归因于其发展历程,因为它的遗传根源来自少数起源于南美洲的基因型。

目的

本研究的目的是评估源自不同地理区域的马铃薯(L.)基因型之间的遗传关系。

材料与方法

本研究提供了25个有用的SSR和EST-SSR,它们位于已有的遗传图谱中,对来自美国、欧洲和伊朗的47个马铃薯基因型进行了指纹分析。

结果

每个位点的等位基因数从2到9不等,平均每个位点有6.22个等位基因。根据Jaccard相似系数,基于微卫星数据构建的UPGMA聚类图根据地理分布将美国和欧洲的马铃薯略微聚类。伊朗基因型“Istanbuli”与美国基因型归为一组。结果表明,与欧洲基因型相比,美国基因型表现出最高的预期杂合度。考虑到欧洲马铃薯起源于有限数量的引种,其遗传基础狭窄,这个结果是可以预期的。

结论

可以得出结论,SSR是评估不同地理区域马铃薯内部和之间遗传多样性的合适标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d4db/5434997/6bce04e570c1/ijb-14-270-g001.jpg

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