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从盐渍沉积物中分离出的新物种陆地动球菌和金色动球菌。

Kineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov., isolated from saline sediment.

作者信息

Xu Fang-Ji, Li Qin-Yuan, Li Gui-Ding, Chen Xiu, Jiang Yi, Jiang Cheng-Lin

机构信息

Yunnan Institute of Microbiology, and Life Science Lab Center, School of Life Science, Yunnan University, Kunming 650091, PR China.

Institute of Microbial Pharmaceuticals, College of Life and Health Sciences, Northeastern University, Shenyang 110819, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Nov;67(11):4801-4807. doi: 10.1099/ijsem.0.002380. Epub 2017 Oct 6.

Abstract

Two novel actinobacteria, designated YIM 121936 and YIM 121940, were isolated from alkaline sediment in Yuanjiang, China. The cells of the novel strains were Gram-stain-positive, aerobic, motile, non-spore-forming and coccus-shaped. The two strains both contained meso-diaminopimelic acid as the diagnostic diamino acid. The whole-cell sugars were arabinose, galactose, glucose, mannose and ribose. The predominant menaquinone was MK-9(H2). The polar lipid profile of both strains comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, one unknown phosphoglycolipid and five unknown phospholipids. The predominant fatty acids of both strains were anteiso-C15 : 0. The genomic DNA G+C contents of strains YIM 121936 and YIM 121940 were 74.7 and 75.2 %, respectively. Strain YIM 121936 was closely related to Kineococcus aurantiacus IFO 15268 (97.19 %), Kineococcus gypseus YIM 121300 (97.00 %) and Kineococcus mangrovi NBRC 110933 (97.00 %). Strain YIM 121940 was closely related to K. aurantiacus IFO 15268 (97.41 %), Kineococcus endophytica KLBMP 1274 (97.18 %), Kineococcus rhizosphaerae RP-B16 (97.09 %), Kineococcus radiotolerans SRS 30216 (97.09 %), K. gypseus YIM 121300 (97.00 %) and K. mangrovi NBRC 110933 (97.00 %). Strain YIM 121936 shared high 16S rRNA gene sequence similarity (99 %) with YIM 121940. Similarities of two strains with other species of the genus Kineococcus were <97 %. The DNA-DNA hybridization values were below 70 % among all the strains studied. YIM 121936 and YIM 121940 are representatives of two new species in the genus Kineococcus, for which names Kineococcus terreus sp. nov. (type strain YIM 121936=KCTC 39738=DSM 102155) and Kineococcus aureolus sp. nov. (type strain YIM 121940=KCTC 39739=DSM 102158) are proposed, respectively.

摘要

从中国沅江的碱性沉积物中分离出两株新的放线菌,分别命名为YIM 121936和YIM 121940。新菌株的细胞革兰氏染色阳性,好氧,具运动性,不产芽孢,呈球菌状。这两株菌株均含有内消旋二氨基庚二酸作为特征性二氨基酸。全细胞糖包括阿拉伯糖、半乳糖、葡萄糖、甘露糖和核糖。主要的甲基萘醌是MK-9(H2)。两株菌株的极性脂谱均由双磷脂酰甘油、磷脂酰甘油、磷脂酰肌醇、磷脂酰肌醇甘露糖苷、一种未知的磷酸糖脂和五种未知的磷脂组成。两株菌株的主要脂肪酸均为anteiso-C15 : 0。菌株YIM 121936和YIM 121940的基因组DNA G+C含量分别为74.7%和75.2%。菌株YIM 121936与橙色动球菌IFO 15268(97.19%)、石膏动球菌YIM 121300(97.00%)和红树林动球菌NBRC 110933(97.00%)密切相关。菌株YIM 121940与橙色动球菌IFO 15268(97.41%)、内生动球菌KLBMP 1274(97.18%)、根际动球菌RP-B16(97.09%)、耐辐射动球菌SRS 30216(97.09%)、石膏动球菌YIM 121300(97.00%)和红树林动球菌NBRC 110933(97.00%)密切相关。菌株YIM 121936与YIM 121940的16S rRNA基因序列相似度很高(99%)。这两株菌株与动球菌属其他种的相似度均<97%。在所有研究的菌株中,DNA-DNA杂交值均低于70%。YIM 121936和YIM 121940是动球菌属两个新物种的代表,分别提出将其命名为陆地动球菌新种(模式菌株YIM 121936=KCTC 39738=DSM 102155)和金色动球菌新种(模式菌株YIM 121940=KCTC 39739=DSM 102158)。

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