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sp. nov.,一种从温泉中分离得到的新型放线菌。

sp. nov., a novel actinobacterium isolated from a hot spring.

机构信息

Department of Microbiology, Shaheed Benazir Bhutto Women University, Peshawar, KPK, Pakistan.

State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Mar;70(3):2053-2058. doi: 10.1099/ijsem.0.004016.

Abstract

A Gram-staining-positive, aerobic, non-motile, non-spore-forming and coccoid-shaped actinobacterial strain, designated YIM 730233, was isolated from a sediment sample, collected from a hot spring in Tibet, China. Colonies were brownish, circular, smooth and convex. Strain YIM 730233 was able to grow in the temperature range of 20-50 °C, pH 6.5-8.0 and in the presence of up to 1.0 % (w/v) NaCl. A comparison of the 16S rRNA gene sequence of strain YIM 730233 with sequences of type strains of most closely related species of showed highest sequence similarities to MSL-05 (98.3%) and Gsoil 818 (98.1%). The draft genome of strain YIM 730233 had a size of 4 806 234 bp with a DNA G+C content of 72.1 mol%. The major fatty acids (>10 %) of strain YIM 730233 mainly consisted of iso-C, anteiso-C and C ω, typical of the genus . Strain YIM 730233 had LL-2,6-diaminopimelic acid as the diagnostic diamino acid in the cell wall. The predominant isoprenoid quinone was MK-8(H). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and an unidentified lipid. DNA-DNA hybridizations between strain YIM 730233 and type strains of MSL-05 and Gsoil 818 resulted in similarity values of 21 and 19% respectively. Based on DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic features, showed that strain YIM 730233 represents a novel species, for which the name sp. nov. (type strain YIM 730233=KCTC 49192=CGMCC 4.7521), is proposed.

摘要

一株革兰氏阳性、需氧、非运动、非孢子形成、球形放线菌菌株,被命名为 YIM 730233,是从中国西藏温泉的沉积物样本中分离出来的。菌落呈棕色,圆形,光滑,凸起。菌株 YIM 730233 能够在 20-50°C、pH 值 6.5-8.0 和高达 1.0%(w/v)NaCl 的条件下生长。与最接近的种的模式菌株的 16S rRNA 基因序列比较表明,菌株 YIM 730233 与 MSL-05(98.3%)和 Gsoil 818(98.1%)的序列相似度最高。菌株 YIM 730233 的基因组草图大小为 4806234bp,GC 含量为 72.1mol%。菌株 YIM 730233 的主要脂肪酸(>10%)主要由 iso-C、anteiso-C 和 Cω组成,这是属的典型特征。菌株 YIM 730233 的细胞壁中含有 LL-2,6-二氨基庚二酸作为特征性二氨基庚二酸。主要的异戊烯醌是 MK-8(H)。极性脂类包括双磷脂酰甘油、磷脂酰甘油、未鉴定的磷脂和未鉴定的脂类。菌株 YIM 730233 与 MSL-05 和 Gsoil 818 的模式菌株之间的 DNA-DNA 杂交产生的相似性值分别为 21%和 19%。基于 DNA-DNA 杂交结果,结合区分生化和化学分类特征,表明菌株 YIM 730233 代表一个新的 种,建议将其命名为 sp. nov.(模式菌株 YIM 730233=KCTC 49192=CGMCC 4.7521)。

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