Department of Microbiology, Shaheed Benazir Bhutto Women University, Peshawar, KPK, Pakistan.
State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China.
Int J Syst Evol Microbiol. 2020 Mar;70(3):2053-2058. doi: 10.1099/ijsem.0.004016.
A Gram-staining-positive, aerobic, non-motile, non-spore-forming and coccoid-shaped actinobacterial strain, designated YIM 730233, was isolated from a sediment sample, collected from a hot spring in Tibet, China. Colonies were brownish, circular, smooth and convex. Strain YIM 730233 was able to grow in the temperature range of 20-50 °C, pH 6.5-8.0 and in the presence of up to 1.0 % (w/v) NaCl. A comparison of the 16S rRNA gene sequence of strain YIM 730233 with sequences of type strains of most closely related species of showed highest sequence similarities to MSL-05 (98.3%) and Gsoil 818 (98.1%). The draft genome of strain YIM 730233 had a size of 4 806 234 bp with a DNA G+C content of 72.1 mol%. The major fatty acids (>10 %) of strain YIM 730233 mainly consisted of iso-C, anteiso-C and C ω, typical of the genus . Strain YIM 730233 had LL-2,6-diaminopimelic acid as the diagnostic diamino acid in the cell wall. The predominant isoprenoid quinone was MK-8(H). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and an unidentified lipid. DNA-DNA hybridizations between strain YIM 730233 and type strains of MSL-05 and Gsoil 818 resulted in similarity values of 21 and 19% respectively. Based on DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic features, showed that strain YIM 730233 represents a novel species, for which the name sp. nov. (type strain YIM 730233=KCTC 49192=CGMCC 4.7521), is proposed.
一株革兰氏阳性、需氧、非运动、非孢子形成、球形放线菌菌株,被命名为 YIM 730233,是从中国西藏温泉的沉积物样本中分离出来的。菌落呈棕色,圆形,光滑,凸起。菌株 YIM 730233 能够在 20-50°C、pH 值 6.5-8.0 和高达 1.0%(w/v)NaCl 的条件下生长。与最接近的种的模式菌株的 16S rRNA 基因序列比较表明,菌株 YIM 730233 与 MSL-05(98.3%)和 Gsoil 818(98.1%)的序列相似度最高。菌株 YIM 730233 的基因组草图大小为 4806234bp,GC 含量为 72.1mol%。菌株 YIM 730233 的主要脂肪酸(>10%)主要由 iso-C、anteiso-C 和 Cω组成,这是属的典型特征。菌株 YIM 730233 的细胞壁中含有 LL-2,6-二氨基庚二酸作为特征性二氨基庚二酸。主要的异戊烯醌是 MK-8(H)。极性脂类包括双磷脂酰甘油、磷脂酰甘油、未鉴定的磷脂和未鉴定的脂类。菌株 YIM 730233 与 MSL-05 和 Gsoil 818 的模式菌株之间的 DNA-DNA 杂交产生的相似性值分别为 21%和 19%。基于 DNA-DNA 杂交结果,结合区分生化和化学分类特征,表明菌株 YIM 730233 代表一个新的 种,建议将其命名为 sp. nov.(模式菌株 YIM 730233=KCTC 49192=CGMCC 4.7521)。