Department of Nephrology, The First Hospital of Jilin University, Changchun, Jilin 130021, P.R. China.
Mol Med Rep. 2017 Dec;16(6):7931-7938. doi: 10.3892/mmr.2017.7666. Epub 2017 Sep 29.
Diabetic kidney disease (DKD) is a common complication of diabetes, which is characterized by albuminuria, impaired glomerular filtration rate or a combination of the two. The aim of the present study was to identify the potential key genes involved in DKD progression and to subsequently investigate the underlying mechanism involved in DKD development. The array data of GSE30528 including 9 DKD and 13 control samples was downloaded from the Gene Expression Omnibus database. The differentially expressed genes (DEGs) in DKD glomerular and tubular kidney biopsy tissues were compared with normal tissues, and were analyzed using the limma package. Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed for DEGs using the GO Function software in Bioconductor. The protein‑protein interaction (PPI) network was then constructed using Cytoscape software. A total of 426 genes (115 up‑ and 311 downregulated) were differentially expressed between the DKD and normal tissue samples. The PPI network was constructed with 184 nodes and 335 edges. Vascular endothelial growth factor A (VEGFA), α‑actinin‑4 (ACTN4), proto‑oncogene, Src family tyrosine kinase (FYN), collagen, type 1, α2 (COL1A2) and insulin‑like growth factor 1 (IGF1) were hub proteins. Major histocompatibility complex, class II, DP α1 (HLA‑DPA1) was the common gene enriched in the rheumatoid arthritis and systemic lupus erythematosus pathways, and the immune response was a GO term enriched in module A. VEGFA, ACTN4, FYN, COL1A2, IGF1 and HLA‑DPA1 may be potential key genes associated with the progression of DKD, and immune mechanisms may serve a part in DKD development.
糖尿病肾病(DKD)是糖尿病的一种常见并发症,其特征为蛋白尿、肾小球滤过率受损或两者兼有。本研究旨在鉴定与 DKD 进展相关的潜在关键基因,并随后研究 DKD 发病机制中涉及的潜在机制。从基因表达综合数据库中下载了包括 9 个 DKD 和 13 个对照样本的 GSE30528 芯片数据集。将 DKD 肾小球和肾小管肾活检组织中的差异表达基因(DEGs)与正常组织进行比较,并使用 limma 包进行分析。使用 Bioconductor 中的 GO 功能软件对 DEGs 进行基因本体论(GO)注释和京都基因与基因组百科全书(KEGG)通路富集分析。然后使用 Cytoscape 软件构建蛋白质-蛋白质相互作用(PPI)网络。在 DKD 和正常组织样本之间共鉴定到 426 个差异表达基因(115 个上调和 311 个下调)。构建的 PPI 网络包含 184 个节点和 335 条边。血管内皮生长因子 A(VEGFA)、α-辅肌动蛋白-4(ACTN4)、原癌基因,Src 家族酪氨酸激酶(FYN)、胶原,类型 1,α2(COL1A2)和胰岛素样生长因子 1(IGF1)是核心蛋白。主要组织相容性复合体,Ⅱ类,DP α1(HLA-DPA1)是类风湿关节炎和系统性红斑狼疮通路中富集的共同基因,免疫反应是模块 A 中富集的 GO 术语。VEGFA、ACTN4、FYN、COL1A2、IGF1 和 HLA-DPA1 可能是与 DKD 进展相关的潜在关键基因,免疫机制可能在 DKD 发病机制中发挥作用。
Front Endocrinol (Lausanne). 2022-6-3
Mol Med Rep. 2017-11-28
Biochem Biophys Res Commun. 2018-11-28
Curr Issues Mol Biol. 2025-8-5
Nucleic Acids Res. 2015-4-20
Diabetes. 2011-7-13
Brief Bioinform. 2011-6-24
Methods Mol Biol. 2011
Diabetes Care. 2010-1
Clin J Am Soc Nephrol. 2009-7