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印度菌株的全基因组鸟枪法测序。 你提供的原文似乎不完整,“of”后面缺少具体内容。

Whole genome shotgun sequencing of Indian strains of .

作者信息

Veeraraghavan Balaji, Devanga Ragupathi Naveen Kumar, Santhanam Sridhar, Verghese Valsan Philip, Inbanathan Francis Yesurajan, Livingston Charles

机构信息

Department of Clinical Microbiology, Christian Medical College, Vellore 632004, India.

Department of Neonatology, Christian Medical College, Vellore 632004, India.

出版信息

Genom Data. 2017 Oct 2;14:63-65. doi: 10.1016/j.gdata.2017.10.001. eCollection 2017 Dec.

DOI:10.1016/j.gdata.2017.10.001
PMID:29021957
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5633162/
Abstract

Group B streptococcus is known as a leading cause of neonatal infections in developing countries. The present study describes the whole genome shotgun sequences of four Group B Streptococcus (GBS) isolates. Molecular data on clonality is lacking for GBS in India. The present genome report will add important information on the scarce genome data of GBS and will help in deriving comparative genome studies of GBS isolates at global level. This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession numbers NHPL00000000 - NHPO00000000.

摘要

B族链球菌被认为是发展中国家新生儿感染的主要原因。本研究描述了4株B族链球菌(GBS)分离株的全基因组鸟枪法测序序列。印度缺乏关于GBS克隆性的分子数据。本基因组报告将为GBS稀缺的基因组数据增添重要信息,并有助于在全球范围内进行GBS分离株的比较基因组研究。这个全基因组鸟枪法测序项目已保存在DDBJ/ENA/GenBank,登录号为NHPL00000000 - NHPO00000000。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d678/5633162/440021a37d6b/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d678/5633162/440021a37d6b/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d678/5633162/440021a37d6b/gr1.jpg

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本文引用的文献

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Neonatal group B streptococcus disease in developing countries: are we ready to deploy a vaccine?发展中国家新生儿 B 群链球菌病:我们是否已准备好部署疫苗?
Expert Rev Vaccines. 2015;14(11):1401-3. doi: 10.1586/14760584.2015.1077121. Epub 2015 Aug 9.
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In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.使用质粒查找工具(PlasmidFinder)和质粒多位点序列分型进行质粒的电子检测和分型
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
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Group B streptococcal infection in a tertiary hospital in India--1998-2010.
印度一家三级医院的B族链球菌感染——1998年至2010年
Pediatr Infect Dis J. 2014 Oct;33(10):1091-2. doi: 10.1097/INF.0000000000000377.
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Online exercise for the design and simulation of PCR and PCR-RFLP experiments.用于PCR和PCR-RFLP实验设计与模拟的在线练习。
BMC Res Notes. 2013 Dec 5;6:513. doi: 10.1186/1756-0500-6-513.
5
PATRIC, the bacterial bioinformatics database and analysis resource.PATRIC,细菌生物信息学数据库和分析资源。
Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.
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Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
7
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.PHYLOViZ:基于序列分型方法的系统发育推断和数据可视化。
BMC Bioinformatics. 2012 May 8;13:87. doi: 10.1186/1471-2105-13-87.
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A multiplex PCR assay for the direct identification of the capsular type (Ia to IX) of Streptococcus agalactiae.一种用于直接鉴定无乳链球菌荚膜型(Ia 至 IX)的多重 PCR 检测方法。
J Microbiol Methods. 2010 Feb;80(2):212-4. doi: 10.1016/j.mimet.2009.11.010. Epub 2009 Dec 1.
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder:一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.