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南海海洋芽孢杆菌新种,从表层海水中分离得到。

Oceanibaculum nanhaiense sp. nov., isolated from surface seawater.

作者信息

Du Yaping, Liu Xiupian, Lai Qiliang, Li Weiwei, Sun Fengqin, Shao Zongze

机构信息

State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Nov;67(11):4842-4845. doi: 10.1099/ijsem.0.002388. Epub 2017 Oct 12.

Abstract

A taxonomic study was carried out on strain L54-1-50, which was isolated from surface seawater of the South China Sea. Cells of strain L54-1-50 were Gram-stain-negative, rod-shaped, oxidase-positive and catalase-positive. Growth was observed at salinities from 0 to 9 % (optimum 2 %, w/v), at pH 6.0-10.0 (optimum 8.0-9.0) and at temperatures from 10 to 45 °C (optimum 25-37 °C), but not at 4 or 50 °C. The 16S rRNA gene sequence analysis indicated that strain L54-1-50 was a member of the genus Oceanibaculum, related to Oceanibaculum indicum P24 (98.8 %) and Oceanibaculum pacificum MC2UP-L3 (97.7 %). The digital DNA-DNA hybridization values between strain L54-1-50 and the two type strains O. indicum P24 and O. pacificum MC2UP-L3 were 35.4±2.5 and 23.7±2.5 %, respectively. The average nucleotide identity values between strain L54-1-50 and two type strains were 79.7 and 88.3 %, respectively. The major cellular fatty acids were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), C16 : 0 and C18 : 1 2-OH. The respiratory quinone was Q-10. The polar lipids comprised diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol, two unidentified phospholipids and three unidentified lipids. The G+C content of the chromosomal DNA was 65.1 mol%. The combined genotypic and phenotypic data showed that strain L54-1-50 represents a novel species of the genus Oceanibaculum, for which the name Oceanibaculumnanhaiense sp. nov. is proposed, with the type strain L54-1-50 (=KCTC 52312=MCCC 1A05150).

摘要

对从中国南海表层海水中分离得到的菌株L54-1-50进行了分类学研究。菌株L54-1-50的细胞革兰氏染色阴性,呈杆状,氧化酶阳性,过氧化氢酶阳性。在盐度0至9%(最适2%,w/v)、pH值6.0至10.0(最适8.0至9.0)以及温度10至45 °C(最适25至37 °C)条件下可观察到生长,但在4或50 °C时不生长。16S rRNA基因序列分析表明,菌株L54-1-50是海洋芽孢杆菌属的成员,与印度洋海洋芽孢杆菌P24(98.8%)和太平洋海洋芽孢杆菌MC2UP-L3(97.7%)相关。菌株L54-1-50与两个模式菌株印度洋海洋芽孢杆菌P24和太平洋海洋芽孢杆菌MC2UP-L3之间的数字DNA-DNA杂交值分别为35.4±2.5%和23.7±2.5%。菌株L54-1-50与两个模式菌株之间的平均核苷酸同一性值分别为79.7%和88.3%。主要细胞脂肪酸为总和特征8(C18 : 1ω7c和/或C18 : 1ω6c)、C16 : 0和C18 : 1 2-OH。呼吸醌为Q-10。极性脂质包括双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰单甲基乙醇胺、磷脂酰甘油、两种未鉴定的磷脂和三种未鉴定的脂质。染色体DNA的G+C含量为65.1 mol%。综合的基因型和表型数据表明,菌株L54-1-50代表海洋芽孢杆菌属的一个新物种,为此提出名称南海海洋芽孢杆菌(Oceanibaculumnanhaiense sp. nov.),模式菌株为L54-1-50(=KCTC 52312=MCCC 1A05150)。

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