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BMC Genomics. 2016 Jan 26;17:79. doi: 10.1186/s12864-015-2234-5.
2
Novel Single Nucleotide Polymorphism-Based Assay for Genotyping Mycobacterium avium subsp. paratuberculosis.基于单核苷酸多态性的新型检测方法用于鸟分枝杆菌副结核亚种基因分型
J Clin Microbiol. 2016 Mar;54(3):556-64. doi: 10.1128/JCM.01958-15. Epub 2015 Dec 16.
3
Genetic diversity of Mycobacterium avium subspecies paratuberculosis and the influence of strain type on infection and pathogenesis: a review.鸟分枝杆菌副结核亚种的遗传多样性及菌株类型对感染和发病机制的影响：综述
Vet Res. 2015 Jun 19;46(1):64. doi: 10.1186/s13567-015-0203-2.
4
From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.从FastQ数据到高可信度变异检测：基因组分析工具包最佳实践流程
Curr Protoc Bioinformatics. 2013;43(1110):11.10.1-11.10.33. doi: 10.1002/0471250953.bi1110s43.
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Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
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eggNOG v4.0: nested orthology inference across 3686 organisms.eggNOG v4.0：跨越 3686 个生物体的嵌套同源推断。
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8
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一株罕见的C型色素沉着亚种的基因组序列草图

Draft Genome Sequence of a Rare Pigmented subsp. Type C Strain.

作者信息

Barbosa Pedro, Leão Célia, Usié Anabel, Amaro Ana, Botelho Ana, Pinto Carlos, Inácio João, Stevenson Karen, Ramos António Marcos

机构信息

Centro de Biotecnologia Agrícola e Agroalimentar do Alentejo (CEBAL)/Instituto Politécnico de Beja (IPBeja), Beja, Portugal.

Instituto de Ciências Agrárias e Ambientais Mediterrânicas (ICAAM), Universidade de Évora, Évora, Portugal.

出版信息

Genome Announc. 2017 Oct 12;5(41):e01066-17. doi: 10.1128/genomeA.01066-17.

DOI:10.1128/genomeA.01066-17
PMID:29025941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5637501/
Abstract

subsp. is the causative agent of paratuberculosis. We report here the draft genome sequence of a rare pigmented subsp. type C strain, comprising 58 contigs and having a genome size of 4,851,414 bp. The genome will assist in the execution of pigmentation and virulence studies on this mycobacterium.

摘要

亚种是副结核病的病原体。我们在此报告一株罕见的色素沉着亚种C型菌株的基因组草图序列，该序列由58个重叠群组成，基因组大小为4,851,414 bp。该基因组将有助于开展对这种分枝杆菌的色素沉着和毒力研究。