School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 69978, Israel.
Bioinformatics. 2018 Jan 1;34(1):134-136. doi: 10.1093/bioinformatics/btx437.
Irys Extract is a software tool for generating genomic information from data collected by the BioNano Genomics Irys platform. The tool allows the user easy access to the raw data in the form of cropped images and genetically aligned intensity profiles. The latter are also made compatible with the BED format for using with popular genomic browsers such as the UCSC Genome Browser.
Irys Extract has been developed in Matlab R2015a, it was tested to work with IrysView 2.4.0.15879 and AutoDetect 2.1.4.9159, and it currently runs under Microsoft Windows operating systems (7-10). Irys Extract can be downloaded alongside its manual and a demo dataset at http://www.nanobiophotonix.com and https://sites.google.com/site/raniarielly/.
Supplementary data are available at Bioinformatics online.
Irys Extract 是一款从 BioNano Genomics Irys 平台收集的数据生成基因组信息的软件工具。该工具允许用户轻松访问以裁剪图像和基因对齐强度分布形式呈现的原始数据。后者也与 BED 格式兼容，可与 UCSC 基因组浏览器等流行的基因组浏览器一起使用。
Irys Extract 是在 Matlab R2015a 中开发的，它经过测试可与 IrysView 2.4.0.15879 和 AutoDetect 2.1.4.9159 一起使用，目前在 Microsoft Windows 操作系统（7-10）下运行。Irys Extract 可以在 http://www.nanobiophotonix.com 和 https://sites.google.com/site/raniarielly/ 下载，同时提供其手册和演示数据集。
补充数据可在 Bioinformatics 在线获取。
