a Division of Electron Microscopy , National Institute of Cholera & Enteric Diseases , P-33 C.I.T Road, Scheme XM, Beleghata, Kolkata 700010 , India.
J Biomol Struct Dyn. 2018 Aug;36(11):2831-2844. doi: 10.1080/07391102.2017.1368416. Epub 2017 Oct 17.
Phage D10, an O1 El Tor tying vibriophage, has been successfully employed to tract the outspread of cholera epidemic. Using Transmission Electron Microscopy and computational image analysis, we have determined the structures of the capsid, head-to-tail connector, the contractile helical tail, the baseplate and combined them to form the complete three-dimensional (3D) D10 phage structure. Using partial denaturation experiments on the genome and using the computed 3D structure of the phage, we have established the packing of the genome ends inside the capsid together with the release styles during the phage infection, respectively. Finally, using the 3D density maps of the different components of the D10 phage, we have presented a simplified picture of morphogenesis of the D10 vibriophage. Using the complete assembled structure of the D10 phage, we have traced the path of the phage genome during the infection process, all the way from the phage head down the tail tube of the tail to the top of the baseplate. To the best of our knowledge, this is first structural study for a long-tailed vibriophage. We have tabulated the structural features of the different components of the phages belonging to the Myoviridae and Siphoviridae. The comparative study suggested the possibility of a common origin of the bacteriophages, irrespective of belonging to different groups and species.
噬菌体能成功追踪霍乱疫情的蔓延,噬菌体 D10 是一种能与 O1 埃尔托霍乱弧菌结合的噬菌。我们使用透射电子显微镜和计算图像分析技术,确定了噬菌体的衣壳、头到尾连接器、可收缩的螺旋尾、基板的结构,并将它们组合起来形成完整的三维(3D)D10 噬菌体结构。通过对基因组进行部分变性实验,并利用噬菌体的计算 3D 结构,我们确定了基因组末端在衣壳内的包装方式以及噬菌体感染过程中的释放方式。最后,我们使用 D10 噬菌体不同成分的 3D 密度图,展示了 D10 弧菌噬菌体形态发生的简化图。利用完整组装的 D10 噬菌体结构,我们追踪了噬菌体基因组在感染过程中的路径,从噬菌体头部沿着尾管一直到基板顶部。据我们所知,这是对长尾噬菌体的首次结构研究。我们还列出了属于肌尾噬菌体科和长尾噬菌体科的噬菌体的不同成分的结构特征。比较研究表明,噬菌体可能具有共同的起源,而不论其属于不同的组和物种。