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人体中噬菌体相互作用影响的计算确定

Computational Determination of the Effects of Bacteriophage Bacteriophage Interactions in Human Body.

作者信息

Mostafa Marwa Mostafa, Nassef Mohammad, Badr Amr

机构信息

Department of Computer Science, Faculty of Computers and Information, Cairo University, Cairo, Egypt.

出版信息

Recent Pat Biotechnol. 2018;12(3):169-176. doi: 10.2174/1872208311666171019155230.

DOI:10.2174/1872208311666171019155230
PMID:29065846
Abstract

BACKGROUND

Chronic diseases are becoming more serious and widely spreading and this carries a heavy burden on doctors to deal with such patients. Although many of these diseases can be treated by bacteriophages, the situation is significantly dangerous in patients having concomitant more than one chronic disease, where conflicts between phages used in treating these diseases are very closer to happen.

METHOD

This research paper presents a method to detecting the Bacteriophage-Bacteriophage Interaction. This method is implemented based on Domain-Domain Interactions model and it was used to infer Domain-Domain Interactions between the bacteriophages injected in the human body at the same time.

RESULTS

By testing the method over bacteriophages that are used to treat tuberculosis, salmonella and virulent E.coli, many interactions have been inferred and detected between these bacteriophages. Several effects were detected for the resulted interactions such as: playing a role in DNA repair such as nonhomologous end joining, playing a role in DNA replication, playing a role in the interaction between the immune system and the tumor cells and playing a role in the stiff man syndrome. We revised all patents relating to bacteriophage bacteriophage interactions and phage therapy.

CONCLUSION

The proposed method is developed to help doctors to realize the effect of simultaneously injecting different bacteriophages into the human body to treat different diseases.

摘要

背景

慢性病日益严重且广泛传播,这给医生治疗此类患者带来了沉重负担。尽管许多此类疾病可用噬菌体治疗,但对于患有多种慢性病的患者而言,情况尤为危险,因为用于治疗这些疾病的噬菌体之间极有可能发生冲突。

方法

本研究论文提出了一种检测噬菌体 - 噬菌体相互作用的方法。该方法基于结构域 - 结构域相互作用模型实施,用于推断同时注入人体的噬菌体之间的结构域 - 结构域相互作用。

结果

通过对用于治疗结核病、沙门氏菌和致病性大肠杆菌的噬菌体测试该方法,已推断并检测到这些噬菌体之间的多种相互作用。检测到所产生的相互作用有多种效应,例如:在DNA修复(如非同源末端连接)中起作用、在DNA复制中起作用、在免疫系统与肿瘤细胞的相互作用中起作用以及在僵人综合征中起作用。我们查阅了所有与噬菌体 - 噬菌体相互作用及噬菌体疗法相关的专利。

结论

所提出的方法旨在帮助医生了解同时向人体注射不同噬菌体以治疗不同疾病的效果。

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