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从城市沿海湿地沉积物中捕获的四种多药耐药质粒的特征分析

Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland.

作者信息

Botts Ryan T, Apffel Brooke A, Walters C J, Davidson Kelly E, Echols Ryan S, Geiger Michael R, Guzman Victoria L, Haase Victoria S, Montana Michal A, La Chat Chip A, Mielke Jenna A, Mullen Kelly L, Virtue Cierra C, Brown Celeste J, Top Eva M, Cummings David E

机构信息

Department of Mathematical, Information and Computer Sciences, Point Loma Nazarene University, San Diego, CA, United States.

Department of Biology, Point Loma Nazarene University, San Diego, CA, United States.

出版信息

Front Microbiol. 2017 Oct 10;8:1922. doi: 10.3389/fmicb.2017.01922. eCollection 2017.

Abstract

Self-transmissible and mobilizable plasmids contribute to the emergence and spread of multidrug-resistant bacteria by enabling the horizontal transfer of acquired antibiotic resistance. The objective of this study was to capture and characterize self-transmissible and mobilizable resistance plasmids from a coastal wetland impacted by urban stormwater runoff and human wastewater during the rainy season. Four plasmids were captured, two self-transmissible and two mobilizable, using both mating and enrichment approaches. Plasmid genomes, sequenced with either Illumina or PacBio platforms, revealed representatives of incompatibility groups IncP-6, IncR, IncN3, and IncF. The plasmids ranged in size from 36 to 144 kb and encoded known resistance genes for most of the major classes of antibiotics used to treat Gram-negative infections (tetracyclines, sulfonamides, β-lactams, fluoroquinolones, aminoglycosides, and amphenicols). The mobilizable IncP-6 plasmid pLNU-11 was discovered in a strain of enriched from the wetland sediments with tetracycline and nalidixic acid, and encodes a novel AmpC-like β-lactamase (), which shares less than 62% amino acid sequence identity with the PDC class of β-lactamases found in . Although the IncR plasmid pTRE-1611 was captured by mating wetland bacteria with KT2440 as recipient, it was found to be mobilizable rather than self-transmissible. Two self-transmissible multidrug-resistance plasmids were also captured: the small (48 kb) IncN3 plasmid pTRE-131 was captured by mating wetland bacteria with HY842 where it is seemed to be maintained at nearly 240 copies per cell, while the large (144 kb) IncF plasmid pTRE-2011, which was isolated from a cefotaxime-resistant environmental strain of ST744, exists at just a single copy per cell. Furthermore, pTRE-2011 bears the globally epidemic extended-spectrum β-lactamase downstream of IS. Our results indicate that urban coastal wetlands are reservoirs of diverse self-transmissible and mobilizable plasmids of relevance to human health.

摘要

自我传递质粒和可移动质粒通过促进获得性抗生素耐药性的水平转移,推动了多重耐药菌的出现和传播。本研究的目的是从雨季受城市雨水径流和生活污水影响的沿海湿地中捕获并鉴定自我传递质粒和可移动耐药质粒。采用接合转移和富集培养两种方法,捕获了4种质粒,其中2种自我传递质粒和2种可移动质粒。使用Illumina或PacBio平台对质粒基因组进行测序,结果显示了不相容群IncP-6、IncR、IncN3和IncF的代表质粒。这些质粒大小在36至144 kb之间,编码用于治疗革兰氏阴性菌感染的大多数主要抗生素类别的已知耐药基因(四环素类、磺胺类、β-内酰胺类、氟喹诺酮类、氨基糖苷类和氯霉素类)。可移动的IncP-6质粒pLNU-11是在一株用四环素和萘啶酸从湿地沉积物中富集得到的菌株中发现的,它编码一种新型AmpC样β-内酰胺酶(),与在中发现的PDC类β-内酰胺酶的氨基酸序列同一性小于62%。虽然IncR质粒pTRE-1611是通过将湿地细菌与KT2440接合转移捕获的,但发现它是可移动的而非自我传递的。还捕获了两种自我传递的多重耐药质粒:小的(48 kb)IncN3质粒pTRE-131是通过将湿地细菌与HY842接合转移捕获的,在该菌株中它似乎以每细胞近240个拷贝的数量维持,而大的(144 kb)IncF质粒pTRE-2011是从一株对头孢噻肟耐药的ST744环境菌株中分离得到的,每细胞仅以单拷贝形式存在。此外,pTRE-2011在IS下游携带全球流行的超广谱β-内酰胺酶。我们的结果表明,城市沿海湿地是与人类健康相关的多种自我传递和可移动质粒的储存库。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09e2/5641379/c0d99ef9bea8/fmicb-08-01922-g001.jpg

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