Ashapkin Vasily V, Kutueva Lyudmila I, Vanyushin Boris F
Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Curr Genomics. 2017 Oct;18(5):385-407. doi: 10.2174/1389202918666170412112130.
Hypermethylation of genes associated with promoter CpG islands, and hypomethylation of CpG poor genes, repeat sequences, transposable elements and intergenic genome sections occur during aging in mammals. Methylation levels of certain CpG sites display strict correlation to age and could be used as "epigenetic clock" to predict biological age. Multi-substrate deacetylases SIRT1 and SIRT6 affect aging via locus-specific modulations of chromatin structure and activity of multiple regulatory proteins involved in aging. Random errors in DNA methylation and other epigenetic marks during aging increase the transcriptional noise, and thus lead to enhanced phenotypic variation between cells of the same tissue. Such variation could cause progressive organ dysfunction observed in aged individuals. Multiple experimental data show that induction of NF-κB regulated gene sets occurs in various tissues of aged mammals. Upregulation of multiple miRNAs occurs at mid age leading to downregulation of enzymes and regulatory proteins involved in basic cellular functions, such as DNA repair, oxidative phosphorylation, intermediate metabolism, and others.
Strong evidence shows that all epigenetic systems contribute to the lifespan control in various organisms. Similar to other cell systems, epigenome is prone to gradual degradation due to the genome damage, stressful agents, and other aging factors. But unlike mutations and other kinds of the genome damage, age-related epigenetic changes could be fully or partially reversed to a "young" state.
在哺乳动物衰老过程中,与启动子CpG岛相关的基因发生高甲基化,而CpG含量低的基因、重复序列、转座元件和基因间基因组区域则发生低甲基化。某些CpG位点的甲基化水平与年龄呈现严格的相关性,可作为“表观遗传时钟”来预测生物学年龄。多底物脱乙酰酶SIRT1和SIRT6通过对染色质结构和多种参与衰老的调节蛋白活性进行位点特异性调节来影响衰老。衰老过程中DNA甲基化和其他表观遗传标记的随机错误会增加转录噪声,从而导致同一组织细胞间的表型变异增强。这种变异可能导致老年个体出现进行性器官功能障碍。多项实验数据表明,在衰老哺乳动物的各种组织中会出现NF-κB调控基因集的诱导。多种miRNA在中年时上调,导致参与基本细胞功能(如DNA修复、氧化磷酸化、中间代谢等)的酶和调节蛋白下调调控。
有力证据表明,所有表观遗传系统都有助于控制各种生物体的寿命。与其他细胞系统类似,由于基因组损伤、应激因素和其他衰老因素,表观基因组容易逐渐降解。但与突变和其他类型的基因组损伤不同,与年龄相关的表观遗传变化可以完全或部分逆转到“年轻”状态。