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高通量测序揭示红树林根际固氮群落的多样性与结构

Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing.

作者信息

Zhang Yanying, Yang Qingsong, Ling Juan, Van Nostrand Joy D, Shi Zhou, Zhou Jizhong, Dong Junde

机构信息

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.

Tropical Marine Biological Research Station in Hainan, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, China.

出版信息

Front Microbiol. 2017 Oct 18;8:2032. doi: 10.3389/fmicb.2017.02032. eCollection 2017.

DOI:10.3389/fmicb.2017.02032
PMID:29093705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5651520/
Abstract

Diazotrophic communities make an essential contribution to the productivity through providing new nitrogen. However, knowledge of the roles that both mangrove tree species and geochemical parameters play in shaping mangove rhizosphere diazotrophic communities is still elusive. Here, a comprehensive examination of the diversity and structure of microbial communities in the rhizospheres of three mangrove species, , , and , was undertaken using highthroughput sequencing of the 16S rRNA and genes. Our results revealed a great diversity of both the total microbial composition and the diazotrophic composition specifically in the mangrove rhizosphere. and were both ubiquitous and dominant, comprising an average of 45.87 and 86.66% of total microbial and diazotrophic communities, respectively. Sulfate-reducing bacteria belonging to the and were the dominant diazotrophs. Community statistical analyses suggested that both mangrove tree species and additional environmental variables played important roles in shaping total microbial and potential diazotroph communities in mangrove rhizospheres. In contrast to the total microbial community investigated by analysis of 16S rRNA gene sequences, most of the dominant diazotrophic groups identified by gene sequences were significantly different among mangrove species. The dominant diazotrophs of the family were positively correlated with total phosphorus, but negatively correlated with the nitrogen to phosphorus ratio. The were positively correlated with the concentration of available potassium, suggesting that diazotrophs potentially play an important role in biogeochemical cycles, such as those of nitrogen, phosphorus, sulfur, and potassium, in the mangrove ecosystem.

摘要

固氮群落通过提供新的氮对生产力做出了重要贡献。然而,红树林树种和地球化学参数在塑造红树林根际固氮群落中所起的作用仍不清楚。在这里,我们利用16S rRNA和[具体基因名称未给出]基因的高通量测序,对三种红树林物种[物种名称未给出]、[物种名称未给出]和[物种名称未给出]根际微生物群落的多样性和结构进行了全面研究。我们的结果揭示了红树林根际中总微生物组成和固氮组成的巨大多样性。[具体微生物名称未给出]和[具体微生物名称未给出]既普遍存在又占主导地位,分别平均占总微生物群落和固氮群落的45.87%和86.66%。属于[具体属名未给出]和[具体属名未给出]的硫酸盐还原菌是主要的固氮菌。群落统计分析表明,红树林树种和其他环境变量在塑造红树林根际的总微生物群落和潜在固氮群落中都发挥了重要作用。与通过16S rRNA基因序列分析所研究的总微生物群落不同,通过[具体基因名称未给出]基因序列鉴定出的大多数优势固氮菌群在不同红树林物种之间存在显著差异。[具体科名未给出]科的优势固氮菌与总磷呈正相关,但与氮磷比呈负相关。[具体属名未给出]与有效钾浓度呈正相关,这表明固氮菌可能在红树林生态系统中的生物地球化学循环(如氮、磷、硫和钾的循环)中发挥重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/5dbf57c06cea/fmicb-08-02032-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/c60e85249004/fmicb-08-02032-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/cb399b026209/fmicb-08-02032-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/c4ae58e17613/fmicb-08-02032-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/e96e0e01a18a/fmicb-08-02032-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/5dbf57c06cea/fmicb-08-02032-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/c60e85249004/fmicb-08-02032-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/cb399b026209/fmicb-08-02032-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/c4ae58e17613/fmicb-08-02032-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/e96e0e01a18a/fmicb-08-02032-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4057/5651520/5dbf57c06cea/fmicb-08-02032-g005.jpg

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