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牛乳房链球菌新种,从患有乳腺炎的奶牛中分离得到。

Streptococcus bovimastitidis sp. nov., isolated from a dairy cow with mastitis.

作者信息

de Vries Stefan P W, Hadjirin Nazreen F, Lay Elizabeth M, Zadoks Ruth N, Peacock Sharon J, Parkhill Julian, Grant Andrew J, McDougall Scott, Holmes Mark A

机构信息

Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.

Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK.

出版信息

Int J Syst Evol Microbiol. 2018 Jan;68(1):21-27. doi: 10.1099/ijsem.0.002321. Epub 2017 Nov 3.

Abstract

Here we describe a new species of the genus Streptococcus that was isolated from a dairy cow with mastitis in New Zealand. Strain NZ1587 was Gram-positive, coccus-shaped and arranged as chains, catalase and coagulase negative, γ-haemolytic and negative for Lancefield carbohydrates (A-D, F and G). The 16S rRNA sequence did not match sequences in the NCBI 16S rRNA or GreenGenes databases. Taxonomic classification of strain NZ1587 was investigated using 16S rRNA and core genome phylogeny, genome-wide average nucleotide identity (ANI) and predicted DNA-DNA hybridisation (DDH) analyses. Phylogeny based on 16S rRNA was unable to resolve the taxonomic position of strain NZ1587, however NZ1587 shared 99.4 % identity at the 16S rRNA level with a distinct branch of S. pseudoporcinus. Importantly, core genome phylogeny demonstrated that NZ1587 grouped amongst the 'pyogenic' streptococcal species and formed a distinct branch supported by a 100 % bootstrap value. In addition, average nucleotide identity and inferred DNA-DNA hybridisation analyses showed that NZ1587 represents a novel species. Biochemical profiling using the rapid ID 32 strep identification test enabled differentiation of strain NZ1587 from closely related streptococcal species. In conclusion, strain NZ1587 can be classified as a novel species, and we propose a novel taxon named Streptococcus bovimastitidis sp. nov.; the type strain is NZ1587. NZ1587 has been deposited in the Culture Collection University of Gothenburg (CCUG 69277) and the Belgian Co-ordinated Collections of Micro-organisms/LMG (LMG 29747).

摘要

在此,我们描述了从新西兰一头患有乳腺炎的奶牛身上分离出的一种链球菌属新物种。菌株NZ1587革兰氏阳性,呈球菌状,排列成链状,过氧化氢酶和凝固酶阴性,γ溶血,对兰斯菲尔德碳水化合物(A - D、F和G)呈阴性反应。其16S rRNA序列与NCBI 16S rRNA或GreenGenes数据库中的序列不匹配。使用16S rRNA和核心基因组系统发育、全基因组平均核苷酸同一性(ANI)以及预测的DNA - DNA杂交(DDH)分析对菌株NZ1587进行了分类学分类。基于16S rRNA的系统发育无法确定菌株NZ1587的分类地位,然而NZ1587在16S rRNA水平上与假猪链球菌的一个独特分支具有99.4%的同一性。重要的是,核心基因组系统发育表明NZ1587归类于“化脓性”链球菌物种之中,并形成了一个由100%自展值支持的独特分支。此外,平均核苷酸同一性和推断的DNA - DNA杂交分析表明NZ1587代表一个新物种。使用快速ID 32链球菌鉴定试验进行生化分析能够区分菌株NZ1587与密切相关的链球菌物种。总之,菌株NZ1587可被归类为一个新物种,我们提议将其命名为牛乳腺炎链球菌新种(Streptococcus bovimastitidis sp. nov.);模式菌株为NZ1587。NZ1587已保藏于哥德堡大学培养物保藏中心(CCUG 69277)和比利时微生物协调保藏中心/LMG(LMG 29747)。

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