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SuperDRUG2:已批准/上市药物的一站式资源。

SuperDRUG2: a one stop resource for approved/marketed drugs.

机构信息

Structural Bioinformatics Group, Experimental and Clinical Research Center (ECRC), Charité - University Medicine Berlin, Berlin, Germany.

German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.

出版信息

Nucleic Acids Res. 2018 Jan 4;46(D1):D1137-D1143. doi: 10.1093/nar/gkx1088.

DOI:10.1093/nar/gkx1088
PMID:29140469
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5753395/
Abstract

Regular monitoring of drug regulatory agency web sites and similar resources for information on new drug approvals and changes to legal status of marketed drugs is impractical. It requires navigation through several resources to find complete information about a drug as none of the publicly accessible drug databases provide all features essential to complement in silico drug discovery. Here, we propose SuperDRUG2 (http://cheminfo.charite.de/superdrug2) as a comprehensive knowledge-base of approved and marketed drugs. We provide the largest collection of drugs (containing 4587 active pharmaceutical ingredients) which include small molecules, biological products and other drugs. The database is intended to serve as a one-stop resource providing data on: chemical structures, regulatory details, indications, drug targets, side-effects, physicochemical properties, pharmacokinetics and drug-drug interactions. We provide a 3D-superposition feature that facilitates estimation of the fit of a drug in the active site of a target with a known ligand bound to it. Apart from multiple other search options, we introduced pharmacokinetics simulation as a unique feature that allows users to visualise the 'plasma concentration versus time' profile for a given dose of drug with few other adjustable parameters to simulate the kinetics in a healthy individual and poor or extensive metabolisers.

摘要

定期监测药品监管机构网站和类似资源,以获取新药批准和已上市药品法律地位变化的信息是不切实际的。这需要通过多个资源进行导航,才能找到有关药物的完整信息,因为没有一个公开的可访问药物数据库提供了补充计算机药物发现所需的所有关键功能。在这里,我们提出了 SuperDRUG2(http://cheminfo.charite.de/superdrug2),作为已批准和已上市药物的综合知识库。我们提供了最大的药物收藏(包含 4587 种活性药物成分),包括小分子、生物制品和其他药物。该数据库旨在作为一站式资源,提供有关以下方面的数据:化学结构、监管细节、适应症、药物靶点、副作用、物理化学性质、药代动力学和药物相互作用。我们提供了 3D 叠加功能,可方便估计药物在具有已知配体结合的靶标活性部位中的拟合程度。除了其他多种搜索选项外,我们还引入了药代动力学模拟作为一项独特的功能,允许用户可视化给定剂量药物的“血浆浓度与时间”曲线,同时还可以调整几个其他可调参数,以模拟健康个体和代谢不良或广泛的代谢者中的动力学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ceb/5753395/752bdd0b98a2/gkx1088fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ceb/5753395/cf21c62d730d/gkx1088fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ceb/5753395/752bdd0b98a2/gkx1088fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ceb/5753395/cf21c62d730d/gkx1088fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ceb/5753395/752bdd0b98a2/gkx1088fig2.jpg

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