Amarin Justin Z, Naffa Randa G, Suradi Haya H, Alsaket Yousof M, Obeidat Nathir M, Mahafza Tareq M, Zihlif Malek A
School of Medicine, The University of Jordan, Amman, Jordan.
Molecular Biology Research Laboratory, School of Medicine, The University of Jordan, Amman, Jordan.
BMC Med Genet. 2017 Nov 15;18(1):132. doi: 10.1186/s12881-017-0494-4.
Asthma and allergic rhinitis are respiratory diseases with a significant global burden. Forkhead box O3 (FOXO3) is a gene involved in the etiology of a number of respiratory diseases. The objective of this study is to assess the association of rs13217795, an intronic FOXO3 single-nucleotide polymorphism, with asthma and allergic rhinitis.
In this case-case-control genetic association study, genotyping was conducted using the PCR-RFLP method. Genotype-based associations were investigated under the general, recessive, and dominant models of disease penetrance using binomial logistic regression; and, allele-based associations were tested using Pearson's chi-squared test.
The final study population consisted of 94 controls, 124 asthmatics, and 110 allergic rhinitis patients. The general and recessive models of disease penetrance were statistically significant for both case-control comparisons. Under the general model, the odds of the asthma phenotype were 1.46 (0.64 to 3.34) and 3.42 (1.37 to 8.57) times higher in heterozygotes and derived allele homozygotes, respectively, compared to ancestral allele homozygotes. The corresponding odds ratios for the allergic rhinitis phenotype were 1.05 (0.46 to 2.40) and 2.35 (0.96 to 5.73), respectively. The dominant model of disease penetrance was not statistically significant. The minor allele in all study groups was the ancestral allele, with a frequency of 0.49 in controls. There was no deviation from Hardy-Weinberg equilibrium in controls. Both case-control allele-based associations were statistically significant.
Herein we present the first report of the association between rs13217795 and allergic rhinitis, and the first independent verification of the association between rs13217795 and asthma. Marker selection in future genetic association studies of asthma and allergic rhinitis should include functional polymorphisms in linkage disequilibrium with rs13217795.
哮喘和过敏性鼻炎是全球负担较重的呼吸道疾病。叉头框O3(FOXO3)是一种与多种呼吸道疾病病因相关的基因。本研究的目的是评估内含子FOXO3单核苷酸多态性rs13217795与哮喘和过敏性鼻炎之间的关联。
在这项病例-病例-对照基因关联研究中,采用聚合酶链反应-限制性片段长度多态性(PCR-RFLP)方法进行基因分型。使用二项逻辑回归在疾病外显率的一般、隐性和显性模型下研究基于基因型的关联;并使用Pearson卡方检验检验基于等位基因的关联。
最终研究人群包括94名对照、124名哮喘患者和110名过敏性鼻炎患者。疾病外显率的一般和隐性模型在两个病例对照比较中均具有统计学意义。在一般模型下,与祖先等位基因纯合子相比,杂合子和衍生等位基因纯合子中哮喘表型的比值比分别高1.46(0.64至3.34)倍和3.42(1.37至8.57)倍。过敏性鼻炎表型的相应比值比分别为1.05(0.46至2.40)和2.35(0.96至5.73)。疾病外显率的显性模型无统计学意义。所有研究组中的次要等位基因为祖先等位基因,对照组中的频率为0.49。对照组中无Hardy-Weinberg平衡偏离。两个基于病例对照等位基因的关联均具有统计学意义。
在此我们首次报告了rs13217795与过敏性鼻炎之间的关联,以及rs13217795与哮喘之间关联的首次独立验证。未来哮喘和过敏性鼻炎基因关联研究中的标记选择应包括与rs13217795处于连锁不平衡的功能多态性。