European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
Nucleic Acids Res. 2018 Jan 4;46(D1):D649-D655. doi: 10.1093/nar/gkx1132.
The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism, and other cellular processes as an ordered network of molecular transformations-an extended version of a classic metabolic map, in a single consistent data model. Reactome functions both as an archive of biological processes and as a tool for discovering unexpected functional relationships in data such as gene expression profiles or somatic mutation catalogues from tumor cells. To support the continued brisk growth in the size and complexity of Reactome, we have implemented a graph database, improved performance of data analysis tools, and designed new data structures and strategies to boost diagram viewer performance. To make our website more accessible to human users, we have improved pathway display and navigation by implementing interactive Enhanced High Level Diagrams (EHLDs) with an associated icon library, and subpathway highlighting and zooming, in a simplified and reorganized web site with adaptive design. To encourage re-use of our content, we have enabled export of pathway diagrams as 'PowerPoint' files.
Reactome 知识库(https://reactome.org)提供了信号转导、运输、DNA 复制、代谢和其他细胞过程的分子细节,作为分子转化的有序网络 - 经典代谢图谱的扩展版本,采用单一一致的数据模型。Reactome 既是生物过程的档案库,也是用于发现数据中意想不到的功能关系的工具,例如来自肿瘤细胞的基因表达谱或体细胞突变目录。为了支持 Reactome 的大小和复杂性的持续快速增长,我们已经实现了图形数据库,改进了数据分析工具的性能,并设计了新的数据结构和策略来提高图表查看器的性能。为了使我们的网站更便于人类用户访问,我们通过实现具有关联图标库的交互式增强高级图(EHLD)以及子路径突出显示和缩放,在具有自适应设计的简化和重新组织的网站中改进了途径显示和导航。为了鼓励对我们内容的再利用,我们已经启用了将途径图导出为“PowerPoint”文件的功能。