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常旅客回忆录:系统发育基因组学揭示了在玉米百合族(Amsinckiinae)中北美和南美之间的 18 次长距离扩散事件。

Memoirs of a frequent flier: Phylogenomics reveals 18 long-distance dispersals between North America and South America in the popcorn flowers (Amsinckiinae).

机构信息

Department of Conservation and Research, Santa Barbara Botanic Garden, Santa Barbara, California 93105 USA.

Division of Biological Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211 USA.

出版信息

Am J Bot. 2017 Nov;104(11):1717-1728. doi: 10.3732/ajb.1700369.

DOI:10.3732/ajb.1700369
PMID:29170248
Abstract

PREMISE OF THE STUDY

American amphitropical disjunction (AAD) is an important but understudied New World biogeographic pattern in which related plants occur in extratropical North America and South America, but are absent in the intervening tropics. Subtribe Amsinckiinae (Boraginaceae) is one of the richest groups of plants displaying the AAD pattern. Here, we infer a time-calibrated molecular phylogeny of the group to evaluate the number, timing, and directionality of AAD events, which yields generalizable insights into the mechanism of AAD.

METHODS

We perform a phylogenomic analysis of 139 samples of subtribe Amsinckiinae and infer divergence times using two calibration schemes: with only fossil calibrations and with fossils plus a secondary calibration from a recent family level analysis. Biogeographic analysis was performed in the R package BioGeoBEARS.

KEY RESULTS

We document 18 examples of AAD in the Amsinckiinae. Inferred divergence times of these AAD examples were strongly asynchronous, ranging from Miocene (17.1 million years ago [Ma]) to Pleistocene (0.33 Ma), with most (12) occurring <5 Ma. Four events occurred 10-5 Ma, during the second rise of the Andes. All AAD examples had a North America to South America directionality.

CONCLUSIONS

Second only to the hyperdiverse Poaceae in number of documented AAD examples, the Amsinckiinae is an ideal system for the study of AAD. Asynchronous divergence times support the hypothesis of long-distance dispersal by birds as the mechanism of AAD in the subtribe and more generally. Further comparative phylogenomic studies may permit biogeographic hypothesis testing and examination of the relationship between AAD and fruit morphology, reproductive biology, and ploidy.

摘要

研究前提

美洲两栖间断分布(AAD)是一个重要但研究不足的新世界生物地理模式,其中相关植物出现在北温带和南美的亚热带以外,但在中间的热带地区不存在。亚科(紫草科)是显示 AAD 模式的最丰富的植物群之一。在这里,我们推断该组的时间校准分子系统发育,以评估 AAD 事件的数量、时间和方向性,这为 AAD 的机制提供了可推广的见解。

方法

我们对亚科的 139 个样本进行了基因组分析,并使用两种校准方案推断了分歧时间:仅使用化石校准和使用化石加最近的家族水平分析的二次校准。生物地理分析在 R 包 BioGeoBEARS 中进行。

主要结果

我们记录了亚科中 18 个 AAD 的例子。这些 AAD 例子的推断分歧时间强烈不同步,范围从中新世(1710 万年前)到更新世(0.33 万年前),其中大多数(12 个)发生在<5 Ma。四个事件发生在 10-5 Ma 之间,在安第斯山脉的第二次崛起期间。所有 AAD 例子都具有从北美洲到南美洲的方向性。

结论

仅次于数量最多的 Poaceae ,亚科是 AAD 研究的理想系统。异步分歧时间支持鸟类长距离扩散作为该亚科以及更普遍的 AAD 机制的假说。进一步的比较基因组学研究可能允许对生物地理假说进行测试,并检查 AAD 与果实形态、生殖生物学和倍性之间的关系。

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