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全基因组癌症/睾丸基因鉴定及其在泛癌分析中与预后的关联

Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis.

作者信息

da Silva Vandeclecio Lira, Fonseca André Faustino, Fonseca Marbella, da Silva Thayna Emilia, Coelho Ana Carolina, Kroll José Eduardo, de Souza Jorge Estefano Santana, Stransky Beatriz, de Souza Gustavo Antonio, de Souza Sandro José

机构信息

Instituto do Cérebro, UFRN, Natal, Brazil.

Ph.D. Program in Bioinformatics, UFRN, Natal, Brazil.

出版信息

Oncotarget. 2017 Oct 10;8(54):92966-92977. doi: 10.18632/oncotarget.21715. eCollection 2017 Nov 3.

Abstract

Cancer/testis (CT) genes are excellent candidates for cancer immunotherapies because of their restrict expression in normal tissues and the capacity to elicit an immune response when expressed in tumor cells. In this study, we provide a genome-wide screen for CT genes with the identification of 745 putative CT genes. Comparison with a set of known CT genes shows that 201 new CT genes were identified. Integration of gene expression and clinical data led us to identify dozens of CT genes associated with either good or poor prognosis. For the CT genes related to good prognosis, we show that there is a direct relationship between CT gene expression and a signal for CD8+ cells infiltration for some tumor types, especially melanoma.

摘要

癌胚(CT)基因是癌症免疫疗法的理想候选对象,因为它们在正常组织中表达受限,而在肿瘤细胞中表达时能够引发免疫反应。在本研究中,我们进行了全基因组筛选以寻找CT基因,共鉴定出745个假定的CT基因。与一组已知的CT基因进行比较后发现,新鉴定出了201个CT基因。整合基因表达和临床数据使我们鉴定出了数十个与预后良好或不良相关的CT基因。对于与预后良好相关的CT基因,我们发现,对于某些肿瘤类型,尤其是黑色素瘤,CT基因表达与CD8 +细胞浸润信号之间存在直接关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc59/5696236/41830c5c8644/oncotarget-08-92966-g001.jpg

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