卵巢癌中与铂类药物再敏感相关的基因组和表观基因组特征。
Genomic and Epigenomic Signatures in Ovarian Cancer Associated with Resensitization to Platinum Drugs.
机构信息
Medical Sciences, School of Medicine, Indiana University, Bloomington, Indiana.
Division of Gynecologic Oncology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.
出版信息
Cancer Res. 2018 Feb 1;78(3):631-644. doi: 10.1158/0008-5472.CAN-17-1492. Epub 2017 Dec 11.
DNA methylation aberrations have been implicated in acquired resistance to platinum drugs in ovarian cancer. In this study, we elucidated an epigenetic signature associated with platinum drug resensitization that may offer utility in predicting the outcomes of patients who are coadministered a DNA methyltransferase inhibitor. The ovarian cancer specimens we analyzed were derived from a recent clinical trial that compared the responses of patients with recurrent platinum-resistant ovarian cancer who received carboplatin plus the DNA methyltransferase inhibitor guadecitabine or a standard-of-care chemotherapy regimen selected by the treating physician. Tumor biopsies or malignant ascites were collected from patients before treatment (day 1, cycle 1) or after treatment (after 2 cycles) for epigenomic and transcriptomic profiling using the Infinium HumanMethylation450 BeadChip (HM450). We defined 94 gene promoters that were hypomethylated significantly by guadecitabine, with 1,659 genes differentially expressed in pretreatment versus posttreatment tumors. Pathway analysis revealed that the experimental regimen significantly altered immune reactivation and DNA repair pathways. Progression-free survival correlated with baseline expression levels of 1,155 genes involved in 25 networks. In functional investigations in ovarian cancer cells, engineered upregulation of certain signature genes silenced by promoter methylation (, , and others) restored platinum drug sensitivity. Overall, our findings illuminate how inhibiting DNA methylation can sensitize ovarian cancer cells to platinum drugs, in large part by altering gene expression patterns related to DNA repair and immune activation, with implications for improving the personalized care and survival outcomes of ovarian cancer patients. Epigenomic targeting may improve therapeutic outcomes in platinum-resistant and recurrent ovarian cancer in part by effects on DNA repair and antitumor immune responses. .
DNA 甲基化异常与卵巢癌对铂类药物获得性耐药有关。在这项研究中,我们阐明了与铂类药物再敏化相关的表观遗传特征,这可能有助于预测同时给予 DNA 甲基转移酶抑制剂的患者的结局。我们分析的卵巢癌标本来自最近的一项临床试验,该试验比较了接受卡铂加 DNA 甲基转移酶抑制剂 guadecitabine或治疗医生选择的标准化疗方案的复发性铂耐药卵巢癌患者的反应。在治疗前(第 1 天,第 1 周期)或治疗后(第 2 周期后),从患者中采集肿瘤活检或恶性腹水,用于使用 Infinium HumanMethylation450 BeadChip(HM450)进行表观基因组和转录组分析。我们定义了 94 个基因启动子,这些启动子被 guadecitabine 显著低甲基化,在预处理与后处理肿瘤中,有 1659 个基因差异表达。通路分析显示,实验方案显著改变了免疫激活和 DNA 修复途径。无进展生存期与涉及 25 个网络的 1155 个基因的基线表达水平相关。在卵巢癌细胞的功能研究中,通过启动子甲基化沉默的某些特征基因的工程上调(、、和其他基因)恢复了铂类药物敏感性。总体而言,我们的发现阐明了抑制 DNA 甲基化如何使卵巢癌细胞对铂类药物敏感,这在很大程度上是通过改变与 DNA 修复和免疫激活相关的基因表达模式,这对改善卵巢癌患者的个性化护理和生存结局具有重要意义。表观基因组靶向可能通过对 DNA 修复和抗肿瘤免疫反应的影响,改善铂耐药和复发性卵巢癌的治疗效果。
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