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小鼠视觉皮层中经验依赖的转录组状态的单细胞分析。

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex.

机构信息

Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Society of Fellows, Harvard University, Cambridge, MA, USA.

出版信息

Nat Neurosci. 2018 Jan;21(1):120-129. doi: 10.1038/s41593-017-0029-5. Epub 2017 Dec 11.


DOI:10.1038/s41593-017-0029-5
PMID:29230054
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5742025/
Abstract

Activity-dependent transcriptional responses shape cortical function. However, a comprehensive understanding of the diversity of these responses across the full range of cortical cell types, and how these changes contribute to neuronal plasticity and disease, is lacking. To investigate the breadth of transcriptional changes that occur across cell types in the mouse visual cortex after exposure to light, we applied high-throughput single-cell RNA sequencing. We identified significant and divergent transcriptional responses to stimulation in each of the 30 cell types characterized, thus revealing 611 stimulus-responsive genes. Excitatory pyramidal neurons exhibited inter- and intralaminar heterogeneity in the induction of stimulus-responsive genes. Non-neuronal cells showed clear transcriptional responses that may regulate experience-dependent changes in neurovascular coupling and myelination. Together, these results reveal the dynamic landscape of the stimulus-dependent transcriptional changes occurring across cell types in the visual cortex; these changes are probably critical for cortical function and may be sites of deregulation in developmental brain disorders.

摘要

活动依赖性转录反应塑造皮质功能。然而,对于这些反应在整个皮质细胞类型中的多样性,以及这些变化如何有助于神经元可塑性和疾病,我们还缺乏全面的了解。为了研究在暴露于光后,在小鼠视觉皮层的细胞类型中发生的转录变化的广度,我们应用了高通量单细胞 RNA 测序。我们在每个被鉴定的 30 种细胞类型中都发现了刺激诱导的显著和不同的转录反应,从而揭示了 611 个刺激反应基因。兴奋性锥体神经元在诱导刺激反应基因方面表现出层间和层内异质性。非神经元细胞表现出明显的转录反应,可能调节神经血管耦联和髓鞘形成的经验依赖性变化。总之,这些结果揭示了视觉皮层中细胞类型间发生的刺激依赖性转录变化的动态景观;这些变化对于皮质功能可能是至关重要的,并且可能是发育性脑疾病中失调的部位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/b99363377fe5/nihms917054f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/37d931700654/nihms917054f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/dae2d66cc72b/nihms917054f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/b99363377fe5/nihms917054f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/37d931700654/nihms917054f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/dae2d66cc72b/nihms917054f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2922/5742025/b99363377fe5/nihms917054f6.jpg

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本文引用的文献

[1]
A molecular census of arcuate hypothalamus and median eminence cell types.

Nat Neurosci. 2017-3

[2]
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Nat Neurosci. 2017-3

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Nat Protoc. 2016-12-8

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Nature. 2016-10-6

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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.

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