Laforest-Lapointe Isabelle, Messier Christian, Kembel Steven W
Département des sciences biologiques, Université du Québec à Montréal, Montréal, Québec, Canada.
Centre d'étude de la forêt, Université du Québec à Montréal, Montréal, Québec, Canada.
mSystems. 2017 Dec 5;2(6). doi: 10.1128/mSystems.00087-17. eCollection 2017 Nov-Dec.
Tree leaf-associated microbiota have been studied in natural ecosystems but less so in urban settings, where anthropogenic pressures on trees could impact microbial communities and modify their interaction with their hosts. Additionally, trees act as vectors spreading bacterial cells in the air in urban environments due to the density of microbial cells on aerial plant surfaces. Characterizing tree leaf bacterial communities along an urban gradient is thus key to understand the impact of anthropogenic pressures on urban tree-bacterium interactions and on the overall urban microbiome. In this study, we aimed (i) to characterize phyllosphere bacterial communities of seven tree species in urban environments and (ii) to describe the changes in tree phyllosphere bacterial community structure and diversity along a gradient of increasing urban intensity and at two degrees of tree isolation. Our results indicate that, as anthropogenic pressures increase, urban leaf bacterial communities show a reduction in the abundance of the dominant class in the natural plant microbiome, the . Our work in the urban environment here reveals that the structures of leaf bacterial communities differ along the gradient of urban intensity. The diversity of phyllosphere microbial communities increases at higher urban intensity, also displaying a greater number and variety of associated indicator taxa than the low and medium urban gradient sites. In conclusion, we find that urban environments influence tree bacterial community composition, and our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes. In natural forests, tree leaf surfaces host diverse bacterial communities whose structure and composition are primarily driven by host species identity. Tree leaf bacterial diversity has also been shown to influence tree community productivity, a key function of terrestrial ecosystems. However, most urban microbiome studies have focused on the built environment, improving our understanding of indoor microbial communities but leaving much to be understood, especially in the nonbuilt microbiome. Here, we provide the first multiple-species comparison of tree phyllosphere bacterial structures and diversity along a gradient of urban intensity. We demonstrate that urban trees possess characteristic bacterial communities that differ from those seen with trees in nonurban environments, with microbial community structure on trees influenced by host species identity but also by the gradient of urban intensity and by the degree of isolation from other trees. Our results suggest that feedback between human activity and plant microbiomes could shape urban microbiomes.
人们已经在自然生态系统中对与树叶相关的微生物群进行了研究,但在城市环境中的研究较少。在城市环境中,人为因素对树木的压力可能会影响微生物群落,并改变它们与宿主的相互作用。此外,由于城市环境中植物表面微生物细胞的密度,树木成为了在空气中传播细菌细胞的载体。因此,沿着城市梯度对树叶细菌群落进行特征描述,是了解人为压力对城市树木与细菌相互作用以及对整个城市微生物群落影响的关键。在本研究中,我们旨在:(i)对城市环境中七种树木的叶际细菌群落进行特征描述;(ii)描述沿着城市强度增加的梯度以及在两种树木隔离程度下,树木叶际细菌群落结构和多样性的变化。我们的结果表明,随着人为压力的增加,城市树叶细菌群落中自然植物微生物群落中优势类群的丰度有所降低。我们在城市环境中的研究表明,树叶细菌群落的结构沿着城市强度梯度存在差异。叶际微生物群落的多样性在城市强度较高时增加,与城市强度低和中等的梯度站点相比,还显示出更多数量和种类的相关指示类群。总之,我们发现城市环境会影响树木细菌群落组成,我们的结果表明人类活动与植物微生物群落之间的反馈可能会塑造城市微生物群落。在天然森林中,树叶表面存在多样的细菌群落,其结构和组成主要由宿主物种身份驱动。树叶细菌多样性也已被证明会影响树木群落生产力,这是陆地生态系统的一项关键功能。然而,大多数城市微生物群落研究都集中在建筑环境上,这增进了我们对室内微生物群落的了解,但仍有许多有待了解之处,尤其是在非建筑微生物群落方面。在这里,我们首次对沿着城市强度梯度的树木叶际细菌结构和多样性进行了多物种比较。我们证明城市树木拥有与非城市环境中的树木不同的特征细菌群落,树木上的微生物群落结构不仅受宿主物种身份影响,还受城市强度梯度以及与其他树木的隔离程度影响。我们的结果表明人类活动与植物微生物群落之间的反馈可能会塑造城市微生物群落。