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从实验到快速易用的计算方法学,预测人类醛氧化酶的选择性和代谢反应。

From Experiments to a Fast Easy-to-Use Computational Methodology to Predict Human Aldehyde Oxidase Selectivity and Metabolic Reactions.

机构信息

Department of Chemistry, Biology and Biotechnology, University of Perugia , via Elce di Sotto 8, 06123 Perugia, Italy.

Consortium for Computational Molecular and Materials Sciences (CMS) , via Elce di Sotto 8, 06123 Perugia, Italy.

出版信息

J Med Chem. 2018 Jan 11;61(1):360-371. doi: 10.1021/acs.jmedchem.7b01552. Epub 2017 Dec 29.

Abstract

Aldehyde oxidase (AOX) is a molibdo-flavoenzyme that has raised great interest in recent years, since its contribution in xenobiotic metabolism has not always been identified before clinical trials, with consequent negative effects on the fate of new potential drugs. The fundamental role of AOX in metabolizing xenobiotics is also due to the attempt of medicinal chemists to stabilize candidates toward cytochrome P450 activity, which increases the risk for new compounds to be susceptible to AOX nucleophile attack. Therefore, novel strategies to predict the potential liability of new entities toward the AOX enzyme are urgently needed to increase effectiveness, reduce costs, and prioritize experimental studies. In the present work, we present the most up-to-date computational method to predict liability toward human AOX (hAOX), for applications in drug design and pharmacokinetic optimization. The method was developed using a large data set of homogeneous experimental data, which is also disclosed as Supporting Information .

摘要

醛氧化酶(AOX)是一种钼黄素酶,近年来引起了极大的兴趣,因为在临床试验之前,其在异生物质代谢中的作用并不总是被确定,从而对新潜在药物的命运产生负面影响。AOX 在代谢异生物质中的基本作用也是由于药物化学家试图稳定候选物向细胞色素 P450 活性的努力,这增加了新化合物易受 AOX 亲核攻击的风险。因此,迫切需要新的策略来预测新实体对 AOX 酶的潜在责任,以提高效率、降低成本并优先进行实验研究。在本工作中,我们提出了最先进的计算方法来预测人类 AOX(hAOX)的责任,用于药物设计和药代动力学优化。该方法是使用大量的同质实验数据开发的,这些数据也作为支持信息披露。

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