Chaudhary Dhiraj Kumar, Kim Jaisoo
Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.
Int J Syst Evol Microbiol. 2018 Feb;68(2):609-615. doi: 10.1099/ijsem.0.002552. Epub 2018 Jan 5.
A cream-coloured, Gram-stain-negative, non-motile and rod-shaped bacterium, designated strain Brt-F, was isolated from oil-contaminated soil. Strain Brt-F was able to grow from 15 to 45 °C, pH 6.5-10.5 and 0-4.5 % (w/v) NaCl concentration. This strain was taxonomically characterized by a polyphasic approach. Based on 16S rRNA gene sequence analysis, strain Brt-F represented a member of the genus Sphingobacterium and shared highest sequence similarity with Sphingobacterium chuzhouense DH-5 (99.4 %); Sphingobacterium gobiense H7 (95.7 %) and Sphingobacterium arenae H-12 (94.3 %). The only respiratory quinone was menaquinone-7, the major polar lipid was phosphatidylethanolamine and the predominant fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0, and iso-C17 : 0 3-OH. The DNA G+C content was 43.4 mol%. The DNA-DNA relatedness value between strain Brt-F and S. chuzhouense KCTC 42746 was 35.7 %, which falls below the threshold value of 70 % for the strain to be considered as novel. The morphological, physiological, chemotaxonomic and phylogenetic analyses clearly distinguished this strain from its closest phylogenetic neighbours. Thus, strain Brt-F represents a novel species of the genus Sphingobacterium, for which the name Sphingobacteriumterrae sp. nov. is proposed. The type strain is Brt-F (=KEMB 9005-691=KACC 19392=JCM 32159).
从受石油污染的土壤中分离出一株奶油色、革兰氏染色阴性、无运动性的杆状细菌,命名为菌株Brt-F。菌株Brt-F能够在15至45 °C、pH 6.5 - 10.5和0 - 4.5 %(w/v)NaCl浓度下生长。该菌株采用多相分类法进行分类鉴定。基于16S rRNA基因序列分析,菌株Brt-F属于鞘氨醇杆菌属,与滁州鞘氨醇杆菌DH-5(99.4 %)、戈壁鞘氨醇杆菌H7(95.7 %)和沙壤鞘氨醇杆菌H-12(94.3 %)的序列相似性最高。唯一的呼吸醌是甲基萘醌-7,主要极性脂是磷脂酰乙醇胺,主要脂肪酸是总和特征3(C16 : 1ω7c和/或C16 : 1ω6c)、异C15 : 0和异C17 : 0 3-OH。DNA G+C含量为43.4 mol%。菌株Brt-F与滁州鞘氨醇杆菌KCTC 42746之间的DNA-DNA相关性值为35.7 %,低于将该菌株视为新物种的阈值70 %。形态学、生理学、化学分类学和系统发育分析清楚地将该菌株与其最接近的系统发育邻居区分开来。因此,菌株Brt-F代表鞘氨醇杆菌属的一个新物种,为此提出名为土壤鞘氨醇杆菌(Sphingobacteriumterrae sp. nov.)。模式菌株为Brt-F(=KEMB 9005-691=KACC 19392=JCM 32159)。