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色氨酸残基在 -5 位在两种来源于白蚁后肠的原生动物 GH26 β-甘露聚糖酶的底物结合中起着关键作用。

Trp residue at subsite - 5 plays a critical role in the substrate binding of two protistan GH26 β-mannanases from a termite hindgut.

机构信息

Department of Biotechnology, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.

Biomass Research Platform Team, Biomass Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.

出版信息

Appl Microbiol Biotechnol. 2018 Feb;102(4):1737-1747. doi: 10.1007/s00253-017-8726-2. Epub 2018 Jan 5.

DOI:10.1007/s00253-017-8726-2
PMID:29305697
Abstract

Symbiotic protists in the hindgut of termites provide a novel enzymatic resource for efficient lignocellulytic degradation of plant biomass. In this study, two β-mannanases, RsMan26A and RsMan26B, from a symbiotic protist community of the lower termite, Reticulitermes speratus, were successfully expressed in the methylotrophic yeast, Pichia pastoris. Biochemical characterization experiments demonstrated that both RsMan26A and RsMan26B are endo-acting enzymes and have a very similar substrate specificity, displaying a higher catalytic efficiency to galactomannan from locust bean gum (LBG) and glucomannan than to β-1,4-mannan and highly substituted galactomannan from guar gum. Homology modeling of RsMan26A and RsMan26B revealed that each enzyme displays a long open cleft harboring a unique hydrophobic platform (Trp) that stacks against the sugar ring at subsite - 5. The K values of W79A mutants of RsMan26A and RsMan26B to LBG increased by 4.8-fold and 3.6-fold, respectively, compared with those for the native enzymes, while the k remained unchanged or about 40% of that of the native enzyme, resulting in the decrease in the catalytic efficiency by 4.8-fold and 9.1-fold, respectively. The kinetic values for glucomannan also showed a similar result. These results demonstrate that the Trp residue present near the subsite - 5 has an important role in the recognition of the sugar ring in the substrate.

摘要

白蚁后肠共生原生动物为植物生物质的高效木质纤维素降解提供了新型酶资源。在这项研究中,两种β-甘露聚糖酶 RsMan26A 和 RsMan26B 来自于低等白蚁台湾乳白蚁的共生原生动物群落,成功地在甲醇营养酵母毕赤酵母中表达。生化特性实验表明,RsMan26A 和 RsMan26B 均为内切酶,具有非常相似的底物特异性,对罗望子豆胶(LBG)中的半乳甘露聚糖和葡甘露聚糖的催化效率高于对 β-1,4-甘露聚糖和高取代半乳甘露聚糖(瓜尔胶)的催化效率。RsMan26A 和 RsMan26B 的同源建模表明,每个酶都显示出一个长的开放裂缝,其中包含一个独特的疏水性平台(色氨酸),与糖环在亚位点-5 处堆叠。与天然酶相比,RsMan26A 和 RsMan26B 的 LBG 的 W79A 突变体的 K 值分别增加了 4.8 倍和 3.6 倍,而 k 保持不变或约为天然酶的 40%,导致催化效率分别降低了 4.8 倍和 9.1 倍。对于葡甘露聚糖的动力学值也显示出类似的结果。这些结果表明,亚位点-5 附近存在的色氨酸残基在识别底物中的糖环方面具有重要作用。

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引用本文的文献

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A surface-exposed GH26 β-mannanase from : Structure, role, and phylogenetic analysis of Man26B.一个来自:结构、功能和系统发生分析的 GH26 β-甘露聚糖酶 Man26B 的表面暴露。
J Biol Chem. 2019 Jun 7;294(23):9100-9117. doi: 10.1074/jbc.RA118.007171. Epub 2019 Apr 18.