Biochemical Sciences Division, CSIR-National Chemical Laboratory, Pune 411008, India.
Biochemical Sciences Division, CSIR-National Chemical Laboratory, Pune 411008, India.
Biochim Biophys Acta Proteins Proteom. 2018 Apr;1866(4):507-518. doi: 10.1016/j.bbapap.2018.01.003. Epub 2018 Jan 8.
Bile Salt Hydrolase (BSH), a member of Cholylglycine hydrolase family, catalyzes the de-conjugation of bile acids and is evolutionarily related to penicillin V acylase (PVA) that hydrolyses a different substrate such as penicillin V. We report the three-dimensional structure of a BSH enzyme from the Gram-positive bacteria Enterococcus faecalis (EfBSH) which has manifold higher hydrolase activity compared to other known BSHs and displays unique allosteric catalytic property. The structural analysis revealed reduced secondary structure content compared to other known BSH structures, particularly devoid of an anti-parallel β-sheet in the assembly loop and part of a β-strand is converted to increase the length of a substrate binding loop 2. The analysis of the substrate binding pocket showed reduced volume owing to altered loop conformations and increased hydrophobicity contributed by a higher ratio of hydrophobic to hydrophilic groups present. The aromatic residues F18, Y20 and F65 participate in substrate binding. Thus, their mutation affects enzyme activity. Docking and Molecular Dynamics simulation studies showed effective polar complementarity present for the three hydroxyl (-OH) groups of GCA substrate in the binding site contributing to higher substrate specificity and efficient catalysis. These are unique features characteristics of this BSH enzyme and thought to contribute to its higher activity and specificity towards bile salts as well as allosteric effects. Further, mechanism of autocatalytic processing of Cholylglycine Hydrolases by the excision of an N-terminal Pre-peptide was examined by inserting different N-terminal pre-peptides in EfBSH sequence. The results suggest that two serine residues next to nucleophile cysteine are essential for autocalytic processing to remove precursor peptide. Since pre-peptide is absent in EfBSH the mutation of these serines is tolerated. This suggests that an evolution-mediated subordination of the pre-peptide excision site resulted in loss of pre-peptide in EfBSH and other related Cholylglycine hydrolases.
胆盐水解酶(BSH)是胆酰甘氨酸水解酶家族的成员,可催化胆汁酸的去共轭作用,并且在进化上与青霉素 V 酰化酶(PVA)有关,后者水解不同的底物,如青霉素 V。我们报道了来自革兰氏阳性细菌粪肠球菌(EfBSH)的 BSH 酶的三维结构,该酶的水解酶活性比其他已知的 BSH 高得多,并显示出独特的变构催化特性。结构分析显示,与其他已知的 BSH 结构相比,二级结构含量降低,特别是在组装环中缺少反平行β-折叠,部分β-链被转换以增加底物结合环 2 的长度。底物结合口袋的分析表明,由于环构象的改变和存在的疏水性基团与亲水性基团的比例增加,导致体积减小。芳香族残基 F18、Y20 和 F65 参与底物结合。因此,它们的突变会影响酶的活性。对接和分子动力学模拟研究表明,在结合位点中,GCA 底物的三个羟基(-OH)基团存在有效的极性互补性,有助于更高的底物特异性和有效的催化作用。这些是该 BSH 酶的独特特征,被认为有助于其对胆汁盐的更高活性和特异性以及变构效应。此外,还通过在 EfBSH 序列中插入不同的 N 端前肽,研究了胆酰甘氨酸水解酶通过切除 N 端前肽的自动催化加工机制。结果表明,靠近亲核半胱氨酸的两个丝氨酸残基对于去除前肽的自动催化加工是必需的。由于 EfBSH 中不存在前肽,因此突变这些丝氨酸是可以容忍的。这表明进化介导的前肽切除位点的从属关系导致 EfBSH 和其他相关胆酰甘氨酸水解酶中前肽的缺失。