Pohlner Marion, Degenhardt Julius, von Hoyningen-Huene Avril J E, Wemheuer Bernd, Erlmann Nora, Schnetger Bernhard, Badewien Thomas H, Engelen Bert
Paleomicrobiology Group, Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany.
Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany.
Front Microbiol. 2017 Dec 18;8:2550. doi: 10.3389/fmicb.2017.02550. eCollection 2017.
By now, only limited information on the group thriving at the seafloor is available. Hence, the current study was conducted to determine their abundance and diversity within Pacific sediments along the 180° meridian. We hypothesize a distinct biogeographical distribution of benthic members of the group linked to nutrient availability within the sediments and productivity of the water column. Lowest cell numbers were counted at the edge of the south Pacific gyre and within the north Pacific gyre followed by an increase to the north with maximum values in the highly productive Bering Sea. Specific quantification of the group revealed on average a relative abundance of 1.7 and 6.3% as determined by catalyzed reported deposition-fluorescence hybridization (CARD-FISH) and quantitative PCR (qPCR), respectively. Corresponding Illumina tag sequencing of 16S rRNA genes and 16S rRNA transcripts showed different compositions containing on average 0.7 and 0.9% -affiliated OTUs of the DNA- and RNA-based communities. These OTUs were mainly assigned to uncultured members of the group. Among those with cultured representatives, and made up the largest proportions. The different oceanic provinces with low nutrient content such as both ocean gyres were characterized by specific communities of the group, distinct from those of the more productive Pacific subarctic region and the Bering Sea. However, linking the community structure to specific metabolic processes at the seafloor is hampered by the dominance of so-far uncultured members of the group, indicating a diversity that has yet to be explored.
到目前为止,关于在海底繁盛的该类群的信息有限。因此,开展了本研究以确定它们在沿180°子午线的太平洋沉积物中的丰度和多样性。我们假设该类群底栖成员的生物地理分布与沉积物中的养分可用性以及水柱生产力相关。在南太平洋环流边缘和北太平洋环流内计数到的细胞数量最少,随后向北增加,在高产的白令海达到最大值。通过催化报告沉积-荧光原位杂交(CARD-FISH)和定量PCR(qPCR)分别测定,该类群的具体定量结果显示平均相对丰度分别为1.7%和6.3%。对16S rRNA基因和16S rRNA转录本进行相应的Illumina标签测序,结果显示不同的组成,基于DNA和RNA的群落中该类群相关OTU的平均含量分别为0.7%和0.9%。这些OTU主要归属于该类群未培养的成员。在有培养代表的那些成员中,[具体名称1]和[具体名称2]占比最大。营养含量低的不同大洋区域,如两个大洋环流,其特征是该类群具有特定群落,与生产力较高的太平洋亚北极地区和白令海的群落不同。然而,由于该类群目前未培养成员占主导,将群落结构与海底特定代谢过程联系起来受到阻碍,这表明其多样性尚待探索。