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结合分支和线性 DNA 结构:从孤立的簇到完全键合的凝胶。

Binding branched and linear DNA structures: From isolated clusters to fully bonded gels.

机构信息

Physics Department, Sapienza-Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy.

出版信息

J Chem Phys. 2018 Jan 14;148(2):025103. doi: 10.1063/1.5011720.

Abstract

The proper design of DNA sequences allows for the formation of well-defined supramolecular units with controlled interactions via a consecution of self-assembling processes. Here, we benefit from the controlled DNA self-assembly to experimentally realize particles with well-defined valence, namely, tetravalent nanostars (A) and bivalent chains (B). We specifically focus on the case in which A particles can only bind to B particles, via appropriately designed sticky-end sequences. Hence AA and BB bonds are not allowed. Such a binary mixture system reproduces with DNA-based particles the physics of poly-functional condensation, with an exquisite control over the bonding process, tuned by the ratio, r, between B and A units and by the temperature, T. We report dynamic light scattering experiments in a window of Ts ranging from 10 °C to 55 °C and an interval of r around the percolation transition to quantify the decay of the density correlation for the different cases. At low T, when all possible bonds are formed, the system behaves as a fully bonded network, as a percolating gel, and as a cluster fluid depending on the selected r.

摘要

通过一系列自组装过程,适当设计的 DNA 序列可以允许形成具有受控相互作用的明确超分子单元。在这里,我们利用受控的 DNA 自组装来实验实现具有明确价态的颗粒,即四价纳米星(A)和二价链(B)。我们特别关注这样一种情况,即 A 颗粒只能通过适当设计的粘性末端序列与 B 颗粒结合。因此,AA 和 BB 键是不允许的。这样的二元混合物系统通过 DNA 基颗粒再现了多功能缩合的物理性质,对键合过程具有精细的控制,通过 B 和 A 单元之间的比率 r 和温度 T 进行调节。我们报告了在 Ts 从 10°C 到 55°C 的窗口和 r 在逾渗转变附近的间隔内的动态光散射实验,以量化不同情况下密度相关的衰减。在低温下,当形成所有可能的键时,该系统表现为完全键合的网络、逾渗凝胶和簇流,这取决于所选择的 r。

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