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综合基因组测序检测到的共发生基因组改变对东亚 EGFR 突变型肺腺癌患者临床结局的影响。

Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma.

机构信息

Division of Thoracic and Cardiovascular Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.

Division of Digestive and General Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.

出版信息

Sci Rep. 2018 Jan 17;8(1):1005. doi: 10.1038/s41598-017-18560-y.

DOI:10.1038/s41598-017-18560-y
PMID:29343775
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5772517/
Abstract

Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease.

摘要

下一代测序 (NGS) 使得对肺癌的基因组改变进行全面检测成为可能。种族差异可能在靶向治疗的疗效中起着关键作用。本研究的目的是确定和比较日本患者与癌症基因组图谱 (TCGA) 之间肺腺癌的基因组改变,TCGA 的大多数患者来自美国。我们还旨在研究在携带 EGFR 突变的患者中额外基因组改变的预后影响。使用基于 NGS 的 415 种已知癌症基因测序对日本肺腺癌患者 (N=100) 进行基因组改变检测,并与临床结果相关联。在 43%的患者中观察到 EGFR 活性突变,即涉及外显子 19 缺失或 L858R 点突变的突变。在本研究中描述的日本队列与 TCGA 之间观察到驱动基因突变流行率存在一些差异。日本队列在细胞周期途径中的基因组改变,即 CDKN2B 和 RB1,明显多于 TCGA。在 EGFR 活性突变患者中,CDKN2B 或 RB1 等基因的同时突变与更差的临床结局相关。我们的数据支持全面测序检测可能影响该疾病临床结局的并发基因组变异的实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/c29afa44f912/41598_2017_18560_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/39cfd9b2f304/41598_2017_18560_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/d3d82a200200/41598_2017_18560_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/c29afa44f912/41598_2017_18560_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/39cfd9b2f304/41598_2017_18560_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/d3d82a200200/41598_2017_18560_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d348/5772517/c29afa44f912/41598_2017_18560_Fig3_HTML.jpg

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A gene expression signature of retinoblastoma loss-of-function is a predictive biomarker of resistance to palbociclib in breast cancer cell lines and is prognostic in patients with ER positive early breast cancer.视网膜母细胞瘤功能丧失的基因表达特征是乳腺癌细胞系中对哌柏西利耐药的预测性生物标志物,并且对雌激素受体阳性早期乳腺癌患者具有预后价值。
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