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无根系统发生树的 Shapley 值。

On the Shapley Value of Unrooted Phylogenetic Trees.

机构信息

Institute of Mathematics and Computer Science, Ernst-Moritz-Arndt University, Greifswald, Germany.

出版信息

Bull Math Biol. 2019 Feb;81(2):618-638. doi: 10.1007/s11538-018-0392-8. Epub 2018 Jan 17.

Abstract

The Shapley value, a solution concept from cooperative game theory, has recently been considered for both unrooted and rooted phylogenetic trees. Here, we focus on the Shapley value of unrooted trees and first revisit the so-called split counts of a phylogenetic tree and the Shapley transformation matrix that allows for the calculation of the Shapley value from the edge lengths of a tree. We show that non-isomorphic trees may have permutation-equivalent Shapley transformation matrices and permutation-equivalent null spaces. This implies that estimating the split counts associated with a tree or the Shapley values of its leaves does not suffice to reconstruct the correct tree topology. We then turn to the use of the Shapley value as a prioritization criterion in biodiversity conservation and compare it to a greedy solution concept. Here, we show that for certain phylogenetic trees, the Shapley value may fail as a prioritization criterion, meaning that the diversity spanned by the top k species (ranked by their Shapley values) cannot approximate the total diversity of all n species.

摘要

Shapley 值是合作博弈论中的一个解决方案概念,最近已被用于无根和有根系统发育树。在这里,我们专注于无根树的 Shapley 值,并首先重新审视系统发育树的所谓分裂计数和 Shapley 变换矩阵,该矩阵允许从树的边长度计算 Shapley 值。我们表明,非同构树可能具有置换等价的 Shapley 变换矩阵和置换等价的零空间。这意味着估计与一棵树相关的分裂计数或其叶子的 Shapley 值不足以重建正确的树拓扑结构。然后,我们将 Shapley 值用作生物多样性保护中的优先级标准,并将其与贪婪解决方案概念进行比较。在这里,我们表明,对于某些系统发育树,Shapley 值可能不能作为优先级标准,这意味着通过排名最高的 k 个物种(按其 Shapley 值排名)所涵盖的多样性不能近似于所有 n 个物种的总多样性。

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