从绢毛猴分离出的属于四个假定新物种的 TRE 1、TRE D、TRE H 和 TRI 7 菌株的基因组序列草图
Draft Genome Sequences of Strains TRE 1, TRE D, TRE H, and TRI 7, Isolated from Tamarins and Belonging to Four Putative Novel Species.
作者信息
Puglisi Edoardo, Mattarelli Paola, Modesto Monica, Bonetti Andrea, Spiezio Caterina, Sandri Camillo, Morelli Lorenzo
机构信息
Department for Sustainable Food Processes, Università Cattolica del Sacro Cuore, Piacenza, Italy
Department of Agricultural Sciences, Università di Bologna, Bologna, Italy.
出版信息
Genome Announc. 2018 Jan 18;6(3):e01449-17. doi: 10.1128/genomeA.01449-17.
Abstract
sp. strains TRE 1, TRE D, TRE H, and TRI 7 were isolated from two tamarins housed in Parco Natura Viva, Garda Zoological Park S.r.l. (Bussolengo, Verona, Italy). These strains belong to four putative novel species of the genus The genome sizes were 2.7 Mb for TRE 1, 2.7 Mb for TRE D, 2.4 Mb for TRE H, and 2.7 Mb for TRI 7. The average GC contents were 63.18% for TRE 1, 58.27% for TRE D, 57.11% for TRE H, and 63.79% for TRI 7.
摘要
sp. 菌株TRE 1、TRE D、TRE H和TRI 7是从意大利维罗纳市布索伦戈加尔达动物园自然公园（Parco Natura Viva, Garda Zoological Park S.r.l.）饲养的两只绢毛猴中分离出来的。这些菌株属于该属四个假定的新物种。TRE 1的基因组大小为2.7 Mb，TRE D为2.7 Mb，TRE H为2.4 Mb，TRI 7为2.7 Mb。TRE 1的平均GC含量为63.18%，TRE D为58.27%，TRE H为57.11%，TRI 7为63.79%。
相似文献
1
Draft Genome Sequences of Strains TRE 1, TRE D, TRE H, and TRI 7, Isolated from Tamarins and Belonging to Four Putative Novel Species.从绢毛猴分离出的属于四个假定新物种的 TRE 1、TRE D、TRE H 和 TRI 7 菌株的基因组序列草图
Genome Announc. 2018 Jan 18;6(3):e01449-17. doi: 10.1128/genomeA.01449-17.
2
Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).原核生物名称：两歧双歧杆菌新种、斯卡利杰尔双歧杆菌新种、费氏双歧杆菌新种和近似双歧杆菌新种：从棉顶狨猴（Saguinus oedipus）和皇柽柳猴（Saguinus imperator）的粪便中分离出的四个新分类单元。
Syst Appl Microbiol. 2018 Nov;41(6):593-603. doi: 10.1016/j.syapm.2018.07.005. Epub 2018 Aug 23.
3
Bifidobacterium aerophilum sp. nov., Bifidobacterium avesanii sp. nov. and Bifidobacterium ramosum sp. nov.: Three novel taxa from the faeces of cotton-top tamarin (Saguinus oedipus L.).嗜氧双歧杆菌新种、阿韦萨尼双歧杆菌新种和拉莫西双歧杆菌新种：来自棉顶狨（Saguinus oedipus L.）粪便的三个新分类单元。
Syst Appl Microbiol. 2016 Jun;39(4):229-236. doi: 10.1016/j.syapm.2016.04.005. Epub 2016 May 12.
4
Bifidobacterium xylocopae sp. nov. and Bifidobacterium aemilianum sp. nov., from the carpenter bee (Xylocopa violacea) digestive tract.短双歧杆菌新种和爱氏双歧杆菌新种，来自木匠蜂（Xylocopa violacea）消化道。
Syst Appl Microbiol. 2019 Mar;42(2):205-216. doi: 10.1016/j.syapm.2018.11.005. Epub 2018 Nov 29.
5
Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.双歧杆菌属六个新种的系统发育分类，包括双歧杆菌anseris 新种、双歧杆菌 criceti 新种、双歧杆菌 imperatoris 新种、双歧杆菌 italicum 新种、双歧杆菌 margollesii 新种和双歧杆菌 parmae 新种。
Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.
6
Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.五种新的双歧杆菌属物种的系统发育多样性特征：新种河狸双歧杆菌、新种美西狨双歧杆菌、新种戈氏双歧杆菌、新种萨米尔双歧杆菌和新种长双歧杆菌
Int J Syst Evol Microbiol. 2019 May;69(5):1288-1298. doi: 10.1099/ijsem.0.003306. Epub 2019 Feb 21.
7
Characterization of the phylogenetic diversity of two novel species belonging to the genus : sp. nov. and sp. nov.鉴定两个新种属的系统发育多样性： sp. nov. 和 sp. nov.
Int J Syst Evol Microbiol. 2020 Apr;70(4):2288-2297. doi: 10.1099/ijsem.0.004032. Epub 2020 Feb 17.
8
Bifidobacterium myosotis sp. nov., Bifidobacterium tissieri sp. nov. and Bifidobacterium hapali sp. nov., isolated from faeces of baby common marmosets (Callithrix jacchus L.).新种耳草双歧杆菌、蒂氏双歧杆菌和哈帕利双歧杆菌，从普通狨猴（Callithrix jacchus L.）幼崽粪便中分离得到。
Int J Syst Evol Microbiol. 2016 Jan;66(1):255-265. doi: 10.1099/ijsem.0.000708. Epub 2015 Oct 28.
9
Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator).来自皇柽柳猴（Saguinus imperator）粪便的新种卡氏双歧杆菌（Bifidobacterium callitrichidarum sp. nov.）
Int J Syst Evol Microbiol. 2018 Jan;68(1):141-148. doi: 10.1099/ijsem.0.002472. Epub 2017 Nov 8.
10
Draft Genome Sequences of sp. Strains and sp. Strains, Isolated from Social Wasps (Vespidae; Polistinae: Epiponini).从社会性黄蜂（胡蜂科；马蜂亚科：大胡蜂族）分离得到的 种菌株和 种菌株的基因组序列草图
Microbiol Resour Announc. 2022 Jan 20;11(1):e0093521. doi: 10.1128/MRA.00935-21. Epub 2022 Jan 6.
本文引用的文献
1
Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator).来自皇柽柳猴（Saguinus imperator）粪便的新种卡氏双歧杆菌（Bifidobacterium callitrichidarum sp. nov.）
Int J Syst Evol Microbiol. 2018 Jan;68(1):141-148. doi: 10.1099/ijsem.0.002472. Epub 2017 Nov 8.
2
Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).新种凡辛德双歧杆菌，从棉顶狨（Saguinus imperator）粪便中分离得到。
Int J Syst Evol Microbiol. 2017 Oct;67(10):3987-3995. doi: 10.1099/ijsem.0.002243. Epub 2017 Sep 12.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Bifidobacterium aerophilum sp. nov., Bifidobacterium avesanii sp. nov. and Bifidobacterium ramosum sp. nov.: Three novel taxa from the faeces of cotton-top tamarin (Saguinus oedipus L.).嗜氧双歧杆菌新种、阿韦萨尼双歧杆菌新种和拉莫西双歧杆菌新种：来自棉顶狨（Saguinus oedipus L.）粪便的三个新分类单元。
Syst Appl Microbiol. 2016 Jun;39(4):229-236. doi: 10.1016/j.syapm.2016.04.005. Epub 2016 May 12.
5
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
6
PATRIC, the bacterial bioinformatics database and analysis resource.PATRIC，细菌生物信息学数据库和分析资源。
Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件