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癌症相关DNA聚合酶ε变体的功能分析 于……(原文此处不完整)

Functional Analysis of Cancer-Associated DNA Polymerase ε Variants in .

作者信息

Barbari Stephanie R, Kane Daniel P, Moore Elizabeth A, Shcherbakova Polina V

机构信息

Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska 68198.

Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska 68198

出版信息

G3 (Bethesda). 2018 Mar 2;8(3):1019-1029. doi: 10.1534/g3.118.200042.

Abstract

DNA replication fidelity relies on base selectivity of the replicative DNA polymerases, exonucleolytic proofreading, and postreplicative DNA mismatch repair (MMR). Ultramutated human cancers without MMR defects carry alterations in the exonuclease domain of DNA polymerase ε (Polε). They have been hypothesized to result from defective proofreading. However, modeling of the most common variant, Polε-P286R, in yeast produced an unexpectedly strong mutator effect that exceeded the effect of proofreading deficiency by two orders of magnitude and indicated the involvement of other infidelity factors. The consequences of many additional Polε mutations reported in cancers remain poorly understood. Here, we genetically characterized 13 cancer-associated Polε variants in the yeast system. Only variants directly altering the DNA binding cleft in the exonuclease domain elevated the mutation rate. Among these, frequently recurring variants were stronger mutators than rare variants, in agreement with the idea that mutator phenotype has a causative role in tumorigenesis. In nearly all cases, the mutator effects exceeded those of an exonuclease-null allele, suggesting that mechanisms distinct from loss of proofreading may drive the genome instability in most ultramutated tumors. All mutator alleles were semidominant, supporting the view that heterozygosity for the polymerase mutations is sufficient for tumor development. In contrast to the DNA binding cleft alterations, peripherally located variants, including a highly recurrent V411L, did not significantly elevate mutagenesis. Finally, the analysis of Polε variants found in MMR-deficient tumors suggested that the majority cause no mutator phenotype alone but some can synergize with MMR deficiency to increase the mutation rate.

摘要

DNA复制保真度依赖于复制性DNA聚合酶的碱基选择性、核酸外切酶校对以及复制后DNA错配修复(MMR)。没有MMR缺陷的超突变人类癌症在DNA聚合酶ε(Polε)的核酸外切酶结构域存在改变。据推测,它们是由校对缺陷导致的。然而,在酵母中对最常见的变体Polε-P286R进行建模产生了出乎意料的强烈诱变效应,该效应比校对缺陷的效应高出两个数量级,并表明存在其他导致错误的因素。癌症中报道的许多其他Polε突变的后果仍知之甚少。在这里,我们在酵母系统中对13种与癌症相关的Polε变体进行了遗传特征分析。只有直接改变核酸外切酶结构域中DNA结合裂隙的变体才会提高突变率。其中,频繁出现的变体比罕见变体具有更强的诱变作用,这与诱变表型在肿瘤发生中起因果作用的观点一致。在几乎所有情况下,诱变效应都超过了核酸外切酶缺失等位基因的效应,这表明与校对功能丧失不同的机制可能在大多数超突变肿瘤中驱动基因组不稳定。所有诱变等位基因都是半显性的,这支持了聚合酶突变的杂合性足以导致肿瘤发生的观点。与DNA结合裂隙改变相反,位于周边的变体,包括高度频繁出现的V411L,并没有显著提高诱变率。最后,对在MMR缺陷肿瘤中发现的Polε变体的分析表明,大多数变体单独不会导致诱变表型,但有些可以与MMR缺陷协同作用以提高突变率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bef/5844290/18bffe8da443/1019f1.jpg

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