From the Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.
the College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310032, China.
J Biol Chem. 2018 Mar 9;293(10):3625-3636. doi: 10.1074/jbc.RA117.001222. Epub 2018 Jan 19.
Aminotransferases are pyridoxal 5'-phosphate-dependent enzymes that catalyze reversible transamination reactions between amino acids and α-keto acids, and are important for the cellular metabolism of nitrogen. Many bacterial and eukaryotic ω-aminotransferases that use l-ornithine (Orn), l-lysine (Lys), or γ-aminobutyrate (GABA) have been identified and characterized, but the corresponding enzymes from archaea are unknown. Here, we examined the activity and function of TK2101, a gene annotated as a GABA aminotransferase, from the hyperthermophilic archaeon We overexpressed the TK2101 gene in and purified and characterized the recombinant protein and found that it displays only low levels of GABA aminotransferase activity. Instead, we observed a relatively high ω-aminotransferase activity with l-Orn and l-Lys as amino donors. The most preferred amino acceptor was 2-oxoglutarate. To examine the physiological role of TK2101, we created a TK2101 gene-disruption strain (ΔTK2101), which was auxotrophic for proline. Growth comparison with the parent strain KU216 and the biochemical characteristics of the protein strongly suggested that TK2101 encodes an Orn aminotransferase involved in the biosynthesis of l-Pro. Phylogenetic comparisons of the TK2101 sequence with related sequences retrieved from the databases revealed the presence of several distinct protein groups, some of which having no experimentally studied member. We conclude that TK2101 is part of a novel group of Orn aminotransferases that are widely distributed at least in the genus , but perhaps also throughout the Archaea.
氨基转移酶是依赖吡哆醛 5'-磷酸的酶,可催化氨基酸和α-酮酸之间的可逆转氨基反应,对氮的细胞代谢很重要。已经鉴定和表征了许多使用 l-鸟氨酸 (Orn)、l-赖氨酸 (Lys) 或 γ-氨基丁酸 (GABA) 的细菌和真核 ω-氨基转移酶,但来自古菌的对应酶尚不清楚。在这里,我们研究了来自嗜热古菌的基因 TK2101 的活性和功能,该基因被注释为 GABA 氨基转移酶。我们在中过量表达了 TK2101 基因,并纯化和表征了重组蛋白,发现它仅显示出低水平的 GABA 氨基转移酶活性。相反,我们观察到相对较高的 ω-氨基转移酶活性,l-Orn 和 l-Lys 作为氨基供体。最优选的氨基受体是 2-氧代戊二酸。为了研究 TK2101 的生理作用,我们创建了一个 TK2101 基因敲除菌株 (ΔTK2101),该菌株对脯氨酸呈营养缺陷型。与亲本菌株 KU216 的生长比较和蛋白的生化特性强烈表明,TK2101 编码一种参与 l-Pro 生物合成的 Orn 氨基转移酶。TK2101 序列与数据库中检索到的相关序列的系统发育比较显示存在几个不同的蛋白质组,其中一些组没有经过实验研究。我们得出结论,TK2101 是一组新型 Orn 氨基转移酶的一部分,这些酶至少在属中广泛分布,但也可能在整个古菌中分布。