Sequanix：用于 SnakeMake 工作流程的动态图形界面。
Sequanix: a dynamic graphical interface for Snakemake workflows.
机构信息
Institut Pasteur-Biomics Pole-CITECH, F-75015, Paris, France.
Institut Pasteur-Bioinformatics and Biostatistics Hub-C3BI, USR 3756 IP CNRS, F-75015, Paris, France.
出版信息
Bioinformatics. 2018 Jun 1;34(11):1934-1936. doi: 10.1093/bioinformatics/bty034.
SUMMARY
We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users.
AVAILABILITY AND IMPLEMENTATION
Source on http://github.com/sequana/sequana, bio-containers on http://bioconda.github.io and Singularity hub (http://singularity-hub.org).
CONTACT
dimitri.desvillechabrol@pasteur.fr or thomas.cokelaer@pasteur.fr.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
我们设计了一个名为 Sequanix 的 PyQt 图形用户界面，旨在将 Snakemake 管道在 NGS 领域及其他领域的使用民主化。默认情况下，Sequanix 包括 Sequana NGS 管道（Snakemake 格式）（http://sequana.readthedocs.io），并且还能够加载任何外部的 Snakemake 管道。新用户可以轻松地以可视化的方式编辑经过专家验证的管道的配置文件，并可以交互式地执行这些生产就绪的工作流程。Sequanix 将对 Snakemake 开发人员公开他们的管道以及广泛的用户群体都非常有用。
可用性和实现
在 http://github.com/sequana/sequana 上获取源代码，在 http://bioconda.github.io 和 Singularity hub（http://singularity-hub.org）上获取生物容器。
联系方式
dimitri.desvillechabrol@pasteur.fr 或 thomas.cokelaer@pasteur.fr。
补充信息
补充数据可在 Bioinformatics 在线获得。
Zotero 插件