Snakemake——一个可扩展的生物信息学工作流引擎。
Snakemake--a scalable bioinformatics workflow engine.
机构信息
Genome Informatics, Institute of Human Genetics, University of Duisburg-Essen and Paediatric Oncology, University Childrens Hospital, 45147 Essen, Germany.
出版信息
Bioinformatics. 2012 Oct 1;28(19):2520-2. doi: 10.1093/bioinformatics/bts480. Epub 2012 Aug 20.
SUMMARY
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.
AVAILABILITY
http://snakemake.googlecode.com.
CONTACT
摘要
Snakemake 是一个工作流引擎，它提供了一个可读的基于 Python 的工作流定义语言和一个强大的执行环境，可以在不修改工作流的情况下从单核心工作站扩展到计算集群。它是第一个支持在输入和输出文件名中自动推断多个命名通配符（或变量）的系统。
可用性
http://snakemake.googlecode.com。
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