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宁夏-1菌株的全基因组序列

Whole-Genome Sequence of Strain Ningxia-1.

作者信息

Sun Peng, Luo Haifeng, Zhang Xin, Xu Jingyi, Guo Yanan, He Shenghu

机构信息

School of Agriculture, Ningxia University, Yinchuan, China.

Virginia-Maryland Regional College of Veterinary Medicine, University of Maryland-College Park, College Park, Maryland, USA.

出版信息

Genome Announc. 2018 Jan 25;6(4):e01367-17. doi: 10.1128/genomeA.01367-17.

DOI:10.1128/genomeA.01367-17
PMID:29371344
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5786670/
Abstract

A genome sequence of the Ningxia-1 strain was tested by Pacific Biosciences (PacBio) single-molecule real-time (SMRT) sequencing technology. The strain was isolated from a lesioned calf lung in 2013 in Pengyang, Ningxia, China. The single circular chromosome of 1,033,629 bp shows differences between complete genome in insertion-like sequences (ISs), integrative conjugative elements (ICEs), lipoproteins (LPs), variable surface lipoproteins (VSPs), pathogenicity islands (PAIs), etc.

摘要

利用太平洋生物科学公司(PacBio)的单分子实时(SMRT)测序技术对宁夏-1株的基因组序列进行了检测。该菌株于2013年在中国宁夏彭阳的一头患病小牛肺中分离得到。其1,033,629 bp的单条环状染色体在插入样序列(ISs)、整合性接合元件(ICEs)、脂蛋白(LPs)、可变表面脂蛋白(VSPs)、致病岛(PAIs)等方面的完整基因组存在差异。

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本文引用的文献

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PLoS One. 2012;7(5):e38239. doi: 10.1371/journal.pone.0038239. Epub 2012 May 31.
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Molecular characterization of extended-spectrum-β-lactamase-producing and plasmid-mediated AmpC β-lactamase-producing Escherichia coli isolated from stray dogs in South Korea.韩国流浪犬中产Extended-spectrum-β-lactamase 和质粒介导 AmpC β-内酰胺酶的大肠杆菌的分子特征。
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The complete genome sequence of Mycoplasma bovis strain Hubei-1.牛支原体湖北 1 株全基因组序列。
PLoS One. 2011;6(6):e20999. doi: 10.1371/journal.pone.0020999. Epub 2011 Jun 22.
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Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
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