宁夏-1菌株的全基因组序列
Whole-Genome Sequence of Strain Ningxia-1.
作者信息
Sun Peng, Luo Haifeng, Zhang Xin, Xu Jingyi, Guo Yanan, He Shenghu
机构信息
School of Agriculture, Ningxia University, Yinchuan, China.
Virginia-Maryland Regional College of Veterinary Medicine, University of Maryland-College Park, College Park, Maryland, USA.
出版信息
Genome Announc. 2018 Jan 25;6(4):e01367-17. doi: 10.1128/genomeA.01367-17.
Abstract
A genome sequence of the Ningxia-1 strain was tested by Pacific Biosciences (PacBio) single-molecule real-time (SMRT) sequencing technology. The strain was isolated from a lesioned calf lung in 2013 in Pengyang, Ningxia, China. The single circular chromosome of 1,033,629 bp shows differences between complete genome in insertion-like sequences (ISs), integrative conjugative elements (ICEs), lipoproteins (LPs), variable surface lipoproteins (VSPs), pathogenicity islands (PAIs), etc.
摘要
利用太平洋生物科学公司（PacBio）的单分子实时（SMRT）测序技术对宁夏-1株的基因组序列进行了检测。该菌株于2013年在中国宁夏彭阳的一头患病小牛肺中分离得到。其1,033,629 bp的单条环状染色体在插入样序列（ISs）、整合性接合元件（ICEs）、脂蛋白（LPs）、可变表面脂蛋白（VSPs）、致病岛（PAIs）等方面的完整基因组存在差异。
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本文引用的文献
1
Comparative geno-plasticity analysis of Mycoplasma bovis HB0801 (Chinese isolate).
PLoS One. 2012;7(5):e38239. doi: 10.1371/journal.pone.0038239. Epub 2012 May 31.
2
Molecular characterization of extended-spectrum-β-lactamase-producing and plasmid-mediated AmpC β-lactamase-producing Escherichia coli isolated from stray dogs in South Korea.
Antimicrob Agents Chemother. 2012 May;56(5):2705-12. doi: 10.1128/AAC.05598-11. Epub 2012 Feb 21.
3
The complete genome sequence of Mycoplasma bovis strain Hubei-1.
PLoS One. 2011;6(6):e20999. doi: 10.1371/journal.pone.0020999. Epub 2011 Jun 22.
4
Complete genome sequence of Mycoplasma bovis type strain PG45 (ATCC 25523).
Infect Immun. 2011 Feb;79(2):982-3. doi: 10.1128/IAI.00726-10. Epub 2010 Dec 6.
5
Pathogenicity islands in bacterial pathogenesis.
Clin Microbiol Rev. 2004 Jan;17(1):14-56. doi: 10.1128/CMR.17.1.14-56.2004.
6
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
7
Pathogenicity islands and the evolution of bacterial pathogens.
Infect Agents Dis. 1996 Jan;5(1):1-7.
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