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嗜热栖热菌钴胺素依赖型甲硫氨酸合成酶的叶酸结合模块表现出经典 TIM 桶的明显变化:带有“扭曲”的 TIM 桶。

The folate-binding module of Thermus thermophilus cobalamin-dependent methionine synthase displays a distinct variation of the classical TIM barrel: a TIM barrel with a `twist'.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, Michigan, USA.

出版信息

Acta Crystallogr D Struct Biol. 2018 Jan 1;74(Pt 1):41-51. doi: 10.1107/S2059798317018290.

Abstract

Methyl transfer between methyltetrahydrofolate and corrinoid molecules is a key reaction in biology that is catalyzed by a number of enzymes in many prokaryotic and eukaryotic organisms. One classic example of such an enzyme is cobalamin-dependent methionine synthase (MS). MS is a large modular protein that utilizes an S2-type mechanism to catalyze the chemically challenging methyl transfer from the tertiary amine (N5) of methyltetrahydrofolate to homocysteine in order to form methionine. Despite over half a century of study, many questions remain about how folate-dependent methyltransferases, and MS in particular, function. Here, the structure of the folate-binding (Fol) domain of MS from Thermus thermophilus is reported in the presence and absence of methyltetrahydrofolate. It is found that the methyltetrahydrofolate-binding environment is similar to those of previously described methyltransferases, highlighting the conserved role of this domain in binding, and perhaps activating, the methyltetrahydrofolate substrate. These structural studies further reveal a new distinct and uncharacterized topology in the C-terminal region of MS Fol domains. Furthermore, it is found that in contrast to the canonical TIM-barrel βα fold found in all other folate-binding domains, MS Fol domains exhibit a unique βα fold. It is posited that these structural differences are important for MS function.

摘要

亚甲基四氢叶酸与钴胺素分子之间的甲基转移是生物学中的一个关键反应,许多原核和真核生物中的许多酶都能催化这一反应。此类酶的一个经典例子是钴胺素依赖性蛋氨酸合酶(MS)。MS 是一种大型模块化蛋白,它利用 S2 型机制催化从亚甲基四氢叶酸的叔胺(N5)到同型半胱氨酸的化学挑战性甲基转移,从而形成蛋氨酸。尽管经过了半个多世纪的研究,但关于依赖叶酸的甲基转移酶,特别是 MS 的功能,仍有许多问题尚未解决。在这里,报告了来自 Thermus thermophilus 的 MS 的叶酸结合(Fol)结构域在存在和不存在亚甲基四氢叶酸的情况下的结构。结果发现,亚甲基四氢叶酸结合环境类似于先前描述的甲基转移酶,突出了该结构域在结合,也许是激活亚甲基四氢叶酸底物方面的保守作用。这些结构研究进一步揭示了 MS Fol 结构域 C 末端区域的一种新的独特且未表征的拓扑结构。此外,还发现与所有其他叶酸结合结构域中存在的典型 TIM 桶βα折叠不同,MS Fol 结构域表现出独特的 βα 折叠。据推测,这些结构差异对 MS 的功能很重要。

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