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小鼠酸性氨基酸脱羧酶GADL1的结构

Structure of the mouse acidic amino acid decarboxylase GADL1.

作者信息

Raasakka Arne, Mahootchi Elaheh, Winge Ingeborg, Luan Weisha, Kursula Petri, Haavik Jan

机构信息

Department of Biomedicine, University of Bergen, Jonas Lies Vei 91, 5009 Bergen, Norway.

Faculty of Biochemistry and Molecular Medicine, University of Oulu, PO Box 5400, 90014 Oulu, Finland.

出版信息

Acta Crystallogr F Struct Biol Commun. 2018 Jan 1;74(Pt 1):65-73. doi: 10.1107/S2053230X17017848.

Abstract

Pyridoxal 5'-phosphate (PLP) is a ubiquitous cofactor in various enzyme classes, including PLP-dependent decarboxylases. A recently discovered member of this class is glutamic acid decarboxylase-like protein 1 (GADL1), which lacks the activity to decarboxylate glutamate to γ-aminobutyrate, despite its homology to glutamic acid decarboxylase. Among the acidic amino acid decarboxylases, GADL1 is most similar to cysteine sulfinic acid decarboxylase (CSAD), but the physiological function of GADL1 is unclear, although its expression pattern and activity suggest a role in neurotransmitter and neuroprotectant metabolism. The crystal structure of mouse GADL1 is described, together with a solution model based on small-angle X-ray scattering data. While the overall fold and the conformation of the bound PLP are similar to those in other PLP-dependent decarboxylases, GADL1 adopts a more loose conformation in solution, which might have functional relevance in ligand binding and catalysis. The structural data raise new questions about the compactness, flexibility and conformational dynamics of PLP-dependent decarboxylases, including GADL1.

摘要

5'-磷酸吡哆醛(PLP)是各类酶中普遍存在的一种辅因子,包括依赖PLP的脱羧酶。该类酶中最近发现的一个成员是谷氨酸脱羧酶样蛋白1(GADL1),尽管它与谷氨酸脱羧酶具有同源性,但却缺乏将谷氨酸脱羧生成γ-氨基丁酸的活性。在酸性氨基酸脱羧酶中,GADL1与半胱氨酸亚磺酸脱羧酶(CSAD)最为相似,不过GADL1的生理功能尚不清楚,尽管其表达模式和活性表明它在神经递质和神经保护剂代谢中发挥作用。本文描述了小鼠GADL1的晶体结构以及基于小角X射线散射数据的溶液模型。虽然结合PLP的整体折叠和构象与其他依赖PLP的脱羧酶相似,但GADL1在溶液中采取更为松散的构象,这可能在配体结合和催化方面具有功能相关性。这些结构数据对包括GADL1在内的依赖PLP的脱羧酶的紧凑性、灵活性和构象动力学提出了新的问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71f/5947694/1769679e9f76/f-74-00065-fig1.jpg

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