Molecular and Structural Biochemistry Department, North Carolina State University, Raleigh, NC, USA; Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Biochim Biophys Acta Gen Subj. 2018 Apr;1862(4):1031-1039. doi: 10.1016/j.bbagen.2018.01.016. Epub 2018 Jan 31.
Cellobiose dehydrogenases have gained interest due to their potential applications in sectors from biofuel production to biomedical devices. The CDHIIA variant is comprised of a cytochrome domain (CYT), a dehydrogenase domain (DH), and a carbohydrate-binding module (CBM) that are connected by two flexible linkers. Upon cellobiose oxidation at the DH, intramolecular electron transfer (IaET) occurs from the DH to the CYT. In vivo, CDHIIA CYT subsequently performs intermolecular electron transfer (IeET) to a lytic polysaccharide monooxygenase (LPMO). The relevant solution-state CDH domain conformations for IaET and IeET have not been fully characterized.
Small-angle X-ray and neutron scattering measurements of oxidized CDHIIA from Myriococcum thermophilum and Neurospora crassa were performed to investigate the structural landscape explored in solution by MtCDHIIA and NcCDHIIA in response to cations, pH, and the presence of an electron acceptor, LPMO9D from N. crassa.
The scattering data complemented by modeling show that, under oxidizing conditions, MtCDHIIA undergoes global conformational rearrangement in the presence of Ca. Oxidized NcCDHIIA exhibits conformational changes upon pH variation and, in the presence of NcLPMO9D, primarily adopts a compact conformation.
These results demonstrate different conformational responses of oxidized MtCDHIIA and NcCDHIIA to changes in environment. The results also reveal a shift in the oxidized NcCDHIIA conformational landscape toward interdomain compaction upon co-incubation with NcLPMO9D.
The present study is the first report on the structural landscapes explored in solution by oxidized cellobiose dehydrogenases under various cation concentrations, pH conditions and in the presence of an electron-accepting LPMO.
由于在从生物燃料生产到生物医学设备等领域的潜在应用,纤维二糖脱氢酶受到了关注。CDHIIA 变体由细胞色素结构域 (CYT)、脱氢酶结构域 (DH) 和一个糖结合模块 (CBM) 组成,它们通过两个柔性接头连接。在 DH 对纤维二糖的氧化过程中,DH 到 CYT 的分子内电子转移 (IaET) 发生。在体内,CDHIIA CYT 随后将分子间电子转移 (IeET) 到裂解多糖单加氧酶 (LPMO)。尚未充分表征 IaET 和 IeET 的相关溶液状态 CDH 结构域构象。
对嗜热栖热菌和粗糙脉孢菌的氧化 CDHIIA 进行小角度 X 射线和中子散射测量,以研究 MtCDHIIA 和 NcCDHIIA 在溶液中响应阳离子、pH 值和电子受体(来自粗糙脉孢菌的 LPMO9D)探索的结构景观。
散射数据和建模结果表明,在氧化条件下,存在 Ca 时 MtCDHIIA 会发生全局构象重排。氧化 NcCDHIIA 在 pH 值变化时表现出构象变化,并且在存在 NcLPMO9D 时,主要采用紧凑构象。
这些结果表明氧化 MtCDHIIA 和 NcCDHIIA 对环境变化的构象响应不同。结果还表明,在与 NcLPMO9D 共孵育时,氧化 NcCDHIIA 的构象景观向域间紧凑性转变。
本研究首次报道了在不同阳离子浓度、pH 值条件下以及存在电子受体 LPMO 时,氧化的纤维二糖脱氢酶在溶液中探索的结构景观。