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对子实体、形态型外生菌根、环境ITS和LSU序列的分析确定了在冰缘地区出现的常见属。

Analyses of Sporocarps, Morphotyped Ectomycorrhizae, Environmental ITS and LSU Sequences Identify Common Genera that Occur at a Periglacial Site.

作者信息

Jumpponen Ari, Brown Shawn P, Trappe James M, Cázares Efrén, Strömmer Rauni

机构信息

Division of Biology, Kansas State University, Manhattan, KS 66506, USA.

Ecological Genomics Institute, Kansas State University, Manhattan, KS 66506, USA.

出版信息

J Fungi (Basel). 2015 May 25;1(1):76-93. doi: 10.3390/jof1010076.

DOI:10.3390/jof1010076
PMID:29376900
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5770010/
Abstract

Periglacial substrates exposed by retreating glaciers represent extreme and sensitive environments defined by a variety of abiotic stressors that challenge organismal establishment and survival. The simple communities often residing at these sites enable their analyses in depth. We utilized existing data and mined published sporocarp, morphotyped ectomycorrhizae (ECM), as well as environmental sequence data of internal transcribed spacer (ITS) and large subunit (LSU) regions of the ribosomal RNA gene to identify taxa that occur at a glacier forefront in the North Cascades Mountains in Washington State in the USA. The discrete data types consistently identified several common and widely distributed genera, perhaps best exemplified by and . Although we expected low diversity and richness, our environmental sequence data included 37 ITS and 26 LSU operational taxonomic units (OTUs) that likely form ECM. While environmental surveys of metabarcode markers detected large numbers of targeted ECM taxa, both the fruiting body and the morphotype datasets included genera that were undetected in either of the metabarcode datasets. These included hypogeous () and epigeous () taxa, some of which may produce large sporocarps but may possess small and/or spatially patchy genets. We highlight the importance of combining various data types to provide a comprehensive view of a fungal community, even in an environment assumed to host communities of low species richness and diversity.

摘要

冰川消退后暴露的冰缘基质代表了极端且敏感的环境,其由多种非生物应激源所界定,这些应激源对生物的定殖和生存构成挑战。通常栖息于这些地点的简单群落便于进行深入分析。我们利用现有数据并挖掘已发表的子实体、形态分型的外生菌根(ECM),以及核糖体RNA基因的内转录间隔区(ITS)和大亚基(LSU)区域的环境序列数据,以识别出美国华盛顿州北喀斯喀特山脉冰川前沿出现的分类群。这些离散的数据类型一致地识别出了几个常见且分布广泛的属,或许以[具体属名1]和[具体属名2]最为典型。尽管我们预期多样性和丰富度较低,但我们的环境序列数据包含了37个ITS和26个LSU操作分类单元(OTU),它们可能形成外生菌根。虽然对代谢条形码标记的环境调查检测到大量目标外生菌根分类群,但子实体和形态型数据集都包含了在任何一个代谢条形码数据集中未检测到的属。这些包括地下生([具体属名3])和地上生([具体属名4])分类群,其中一些可能产生大型子实体,但可能具有小的和/或空间上零散的个体。我们强调了结合各种数据类型以全面了解真菌群落的重要性,即使是在一个被认为物种丰富度和多样性较低的群落所占据的环境中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58ef/5770010/88e25c2f6f36/jof-01-00076-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58ef/5770010/a25a94585a1e/jof-01-00076-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58ef/5770010/88e25c2f6f36/jof-01-00076-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58ef/5770010/a25a94585a1e/jof-01-00076-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58ef/5770010/88e25c2f6f36/jof-01-00076-g002.jpg

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