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通过亚氯酸盐歧化酶与其氰化物配合物区分活性位点特征

Distinguishing Active Site Characteristics of Chlorite Dismutases with Their Cyanide Complexes.

作者信息

Geeraerts Zachary, Celis Arianna I, Mayfield Jeffery A, Lorenz Megan, Rodgers Kenton R, DuBois Jennifer L, Lukat-Rodgers Gudrun S

机构信息

Department of Chemistry and Biochemistry , North Dakota State University , Fargo , North Dakota 58102 , United States.

Department of Chemistry and Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.

出版信息

Biochemistry. 2018 Mar 6;57(9):1501-1516. doi: 10.1021/acs.biochem.7b01278. Epub 2018 Feb 16.

Abstract

O-evolving chlorite dismutases (Clds) efficiently convert chlorite (ClO) to O and Cl. Dechloromonas aromatica Cld ( DaCld) is a highly active chlorite-decomposing homopentameric enzyme, typical of Clds found in perchlorate- and chlorate-respiring bacteria. The Gram-negative, human pathogen Klebsiella pneumoniae contains a homodimeric Cld ( KpCld) that also decomposes ClO, albeit with an activity 10-fold lower and a turnover number lower than those of DaCld. The interactions between the distal pocket and heme ligand of the DaCld and KpCld active sites have been probed via kinetic, thermodynamic, and spectroscopic behaviors of their cyanide complexes for insight into active site characteristics that are deterministic for chlorite decomposition. At 4.7 × 10 M, the K for the KpCld-CN complex is 2 orders of magnitude smaller than that of DaCld-CN and indicates an affinity for CN that is greater than that of most heme proteins. The difference in CN affinity between Kp- and DaClds is predominantly due to differences in k. The kinetics of binding of cyanide to DaCld, DaCld(R183Q), and KpCld between pH 4 and 8.5 corroborate the importance of distal Arg183 and a p K of ∼7 in stabilizing complexes of anionic ligands, including the substrate. The Fe-C stretching and FeCN bending modes of the DaCld-CN (ν, 441 cm; δ, 396 cm) and KpCld-CN (ν, 441 cm; δ, 356 cm) complexes reveal differences in their FeCN angle, which suggest different distal pocket interactions with their bound cyanide. Conformational differences in their catalytic sites are also reported by the single ferrous KpCld carbonyl complex, which is in contrast to the two conformers observed for DaCld-CO.

摘要

不断进化的亚氯酸盐歧化酶(Clds)能有效地将亚氯酸盐(ClO)转化为O和Cl。脱氯芳香单胞菌Cld(DaCld)是一种高活性的亚氯酸盐分解同五聚体酶,是在高氯酸盐和氯酸盐呼吸细菌中发现的Clds的典型代表。革兰氏阴性人类病原体肺炎克雷伯菌含有一种同二聚体Cld(KpCld),它也能分解ClO,尽管其活性比DaCld低10倍,周转数也比DaCld低。通过其氰化物复合物的动力学、热力学和光谱行为,对DaCld和KpCld活性位点的远端口袋与血红素配体之间的相互作用进行了探究,以深入了解对亚氯酸盐分解起决定性作用的活性位点特征。在4.7×10 M时,KpCld-CN复合物的K比DaCld-CN的K小2个数量级,这表明其对CN的亲和力大于大多数血红素蛋白。KpCld和DaCld之间CN亲和力的差异主要是由于k的差异。在pH 4至8.5之间,氰化物与DaCld、DaCld(R183Q)和KpCld结合的动力学证实了远端精氨酸183和pK约为7在稳定包括底物在内的阴离子配体复合物中的重要性。DaCld-CN(ν,441 cm;δ,396 cm)和KpCld-CN(ν,441 cm;δ,356 cm)复合物的Fe-C伸缩和FeCN弯曲模式揭示了它们FeCN角的差异,这表明它们的远端口袋与结合的氰化物之间存在不同的相互作用。单亚铁KpCld羰基复合物也报道了其催化位点的构象差异,这与DaCld-CO观察到的两种构象形成对比。

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