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用深度学习预测血管性痴呆小鼠模型中莫里斯水迷宫试验的结果。

Predicting outcome of Morris water maze test in vascular dementia mouse model with deep learning.

作者信息

Higaki Akinori, Mogi Masaki, Iwanami Jun, Min Li-Juan, Bai Hui-Yu, Shan Bao-Shuai, Kukida Masayoshi, Kan-No Harumi, Ikeda Shuntaro, Higaki Jitsuo, Horiuchi Masatsugu

机构信息

Department of Molecular Cardiovascular Biology and Pharmacology, Ehime University, Graduate School of Medicine, Tohon, Ehime, Japan.

Department of Cardiology, Pulmonology, Hypertension and Nephrology, Ehime University, Graduate School of Medicine, Tohon, Ehime, Japan.

出版信息

PLoS One. 2018 Feb 7;13(2):e0191708. doi: 10.1371/journal.pone.0191708. eCollection 2018.

DOI:10.1371/journal.pone.0191708
PMID:29415035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5802845/
Abstract

The Morris water maze test (MWM) is one of the most popular and established behavioral tests to evaluate rodents' spatial learning ability. The conventional training period is around 5 days, but there is no clear evidence or guidelines about the appropriate duration. In many cases, the final outcome of the MWM seems predicable from previous data and their trend. So, we assumed that if we can predict the final result with high accuracy, the experimental period could be shortened and the burden on testers reduced. An artificial neural network (ANN) is a useful modeling method for datasets that enables us to obtain an accurate mathematical model. Therefore, we constructed an ANN system to estimate the final outcome in MWM from the previously obtained 4 days of data in both normal mice and vascular dementia model mice. Ten-week-old male C57B1/6 mice (wild type, WT) were subjected to bilateral common carotid artery stenosis (WT-BCAS) or sham-operation (WT-sham). At 6 weeks after surgery, we evaluated their cognitive function with MWM. Mean escape latency was significantly longer in WT-BCAS than in WT-sham. All data were collected and used as training data and test data for the ANN system. We defined a multiple layer perceptron (MLP) as a prediction model using an open source framework for deep learning, Chainer. After a certain number of updates, we compared the predicted values and actual measured values with test data. A significant correlation coefficient was derived form the updated ANN model in both WT-sham and WT-BCAS. Next, we analyzed the predictive capability of human testers with the same datasets. There was no significant difference in the prediction accuracy between human testers and ANN models in both WT-sham and WT-BCAS. In conclusion, deep learning method with ANN could predict the final outcome in MWM from 4 days of data with high predictive accuracy in a vascular dementia model.

摘要

莫里斯水迷宫试验(MWM)是评估啮齿动物空间学习能力最常用且成熟的行为测试之一。传统的训练期约为5天,但对于合适的持续时间尚无明确证据或指导原则。在许多情况下,MWM的最终结果似乎可以根据先前的数据及其趋势进行预测。因此,我们假设如果能够高精度预测最终结果,那么实验周期可以缩短,测试人员的负担也会减轻。人工神经网络(ANN)是一种适用于数据集的有用建模方法,能使我们获得准确的数学模型。因此,我们构建了一个ANN系统,根据正常小鼠和血管性痴呆模型小鼠先前4天的数据来估计MWM的最终结果。将10周龄的雄性C57B1/6小鼠(野生型,WT)进行双侧颈总动脉狭窄手术(WT-BCAS)或假手术(WT-假手术)。术后6周,我们用MWM评估它们的认知功能。WT-BCAS组的平均逃避潜伏期显著长于WT-假手术组。所有数据均被收集并用作ANN系统的训练数据和测试数据。我们使用深度学习开源框架Chainer将多层感知器(MLP)定义为预测模型。经过一定次数的更新后,我们将预测值与测试数据的实际测量值进行比较。在WT-假手术组和WT-BCAS组中,更新后的ANN模型都得出了显著的相关系数。接下来,我们用相同的数据集分析了人类测试人员的预测能力。在WT-假手术组和WT-BCAS组中,人类测试人员和ANN模型在预测准确性上没有显著差异。总之,在血管性痴呆模型中,基于ANN的深度学习方法能够根据4天的数据以高预测精度预测MWM的最终结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/75a13c0c0a9e/pone.0191708.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/19a378014063/pone.0191708.g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/837af3a9f2fc/pone.0191708.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/75a13c0c0a9e/pone.0191708.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/19a378014063/pone.0191708.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/39463a21e287/pone.0191708.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/4b87778a5407/pone.0191708.g003.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4195/5802845/75a13c0c0a9e/pone.0191708.g005.jpg

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