Department of Applied Chemistry, Kyung Hee University, Seoul, Republic of Korea.
Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Seoul, Republic of Korea.
Proteomics. 2018 Mar;18(5-6):e1700458. doi: 10.1002/pmic.201700458.
Quantitative proteomic analysis using stable isotope labeling with amino acids in cell culture (SILAC), as metabolic labeling with MS, has been used as an excellent technique to measure relative abundance change in proteins and post-transitional modifications. Since its development in 2002, SILAC has proven to have unique and specific advantage compared to other labeling methods such as Isobaric tags for relative and absolute quantitation (iTRAQ) and Tandem Mass Tag (TMT). However, SILAC has limitations in its application to human tissue/organ samples and some types of unicellular organisms that convert supplemented heavy amino acids to others. In this issue, Kaneva et al. (Proteomics 2018, 18, 1700278) introduces a new application of SILAC to a pathogen, which allows quantitative proteomics analysis to be performed without the need of arginine auxotrophs for SILAC experiment. In fungal pathogens, such as Candida albicans and other yeast family, arginine metabolism is one of the factors that helps pathogen escape host's defenses. This prevents arginine auxotrophs from being used in C. albicans research and limits SILAC-based MS method as a choice of quantitation. However, possibilities for quantitative proteomic analysis of a pathogenic yeast C. albicans using SILAC has now opened by Kaneva et al.
使用稳定同位素标记与相对和绝对定量技术(SILAC)进行定量蛋白质组学分析,作为代谢标记与 MS,已被用作测量蛋白质和翻译后修饰相对丰度变化的出色技术。自 2002 年开发以来,与其他标记方法(如相对和绝对定量的同重同位素标记技术(iTRAQ)和串联质量标签(TMT))相比,SILAC 具有独特且特定的优势。然而,SILAC 在应用于人体组织/器官样本和某些将补充的重氨基酸转化为其他氨基酸的单细胞生物方面存在局限性。在本期杂志中,Kaneva 等人(Proteomics 2018, 18, 1700278)介绍了 SILAC 的一种新应用,可用于病原体,无需 SILAC 实验中的精氨酸营养缺陷型即可进行定量蛋白质组学分析。在真菌病原体中,如白色念珠菌和其他酵母家族,精氨酸代谢是帮助病原体逃避宿主防御的因素之一。这使得不能在白色念珠菌研究中使用精氨酸营养缺陷型,限制了基于 SILAC 的 MS 方法作为定量选择。然而,现在,Kaneva 等人已经为致病性酵母白色念珠菌的定量蛋白质组学分析开辟了可能性。